Acidiplasma cupricumulans

Taxonomy: cellular organisms; Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; Ferroplasmaceae; Acidiplasma

Average proteome isoelectric point is 6.78

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1683 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0Q0XIK9|A0A0Q0XIK9_9ARCH Uncharacterized protein OS=Acidiplasma cupricumulans OX=312540 GN=AOG55_00690 PE=4 SV=1
MM1 pKa = 7.83GDD3 pKa = 4.11FIKK6 pKa = 10.67KK7 pKa = 10.3FEE9 pKa = 4.12YY10 pKa = 11.03LEE12 pKa = 4.46DD13 pKa = 4.11LNITLEE19 pKa = 3.77LAYY22 pKa = 10.53RR23 pKa = 11.84LNYY26 pKa = 9.11NFKK29 pKa = 8.26GCGYY33 pKa = 9.67IKK35 pKa = 10.46VYY37 pKa = 10.04SGKK40 pKa = 9.7IDD42 pKa = 3.74PEE44 pKa = 4.07EE45 pKa = 3.97EE46 pKa = 3.75NYY48 pKa = 10.02EE49 pKa = 3.99IYY51 pKa = 9.83MEE53 pKa = 4.51SLDD56 pKa = 4.09CGMSEE61 pKa = 5.36DD62 pKa = 4.45EE63 pKa = 5.46VNSKK67 pKa = 8.43YY68 pKa = 11.26NKK70 pKa = 9.34MIGEE74 pKa = 4.11IRR76 pKa = 11.84SGDD79 pKa = 3.24IDD81 pKa = 4.33LSLL84 pKa = 5.04

Molecular weight: 9.82 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0Q0XLZ3|A0A0Q0XLZ3_9ARCH Methylmalonate-semialdehyde dehydrogenase OS=Acidiplasma cupricumulans OX=312540 GN=AOG55_03945 PE=4 SV=1
MM1 pKa = 7.45SRR3 pKa = 11.84NKK5 pKa = 10.19PLGKK9 pKa = 10.0KK10 pKa = 9.39LRR12 pKa = 11.84LMNRR16 pKa = 11.84IKK18 pKa = 10.79SNRR21 pKa = 11.84RR22 pKa = 11.84VPGWVMLRR30 pKa = 11.84TDD32 pKa = 3.1RR33 pKa = 11.84HH34 pKa = 4.16VTQNPKK40 pKa = 9.45RR41 pKa = 11.84KK42 pKa = 8.31NWRR45 pKa = 11.84RR46 pKa = 11.84SNLKK50 pKa = 10.1LL51 pKa = 3.65

Molecular weight: 6.27 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1683

0

1683

497383

43

1698

295.5

33.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.725 ± 0.052

0.604 ± 0.018

5.544 ± 0.055

5.885 ± 0.066

4.97 ± 0.057

6.691 ± 0.049

1.494 ± 0.022

10.966 ± 0.068

7.542 ± 0.067

8.797 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.888 ± 0.027

6.535 ± 0.072

3.44 ± 0.034

1.702 ± 0.027

3.918 ± 0.039

6.961 ± 0.047

4.675 ± 0.038

5.732 ± 0.047

0.75 ± 0.018

5.181 ± 0.045
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski