Lachancea lanzarotensis

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Dikarya; Ascomycota; saccharomyceta; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Lachancea

Average proteome isoelectric point is 6.5

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5055 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0C7MUT3|A0A0C7MUT3_9SACH AP complex subunit beta OS=Lachancea lanzarotensis OX=1245769 GN=LALA0_S08e05842g PE=3 SV=1
MM1 pKa = 7.74TYY3 pKa = 10.24SQQDD7 pKa = 3.43FQDD10 pKa = 3.62EE11 pKa = 4.64VFSFSLTNDD20 pKa = 2.95APALQHH26 pKa = 6.41SPSSYY31 pKa = 11.07GSATDD36 pKa = 4.04MIPDD40 pKa = 3.65EE41 pKa = 4.55EE42 pKa = 4.4FLIEE46 pKa = 4.26SPGFGAVAHH55 pKa = 6.18TADD58 pKa = 5.58DD59 pKa = 4.33DD60 pKa = 4.84DD61 pKa = 5.02EE62 pKa = 6.03LFALDD67 pKa = 4.68TEE69 pKa = 5.15LSMLPRR75 pKa = 11.84SYY77 pKa = 11.48DD78 pKa = 3.52CLPIDD83 pKa = 4.48DD84 pKa = 5.12AKK86 pKa = 10.86TMVSDD91 pKa = 3.94YY92 pKa = 11.01SLPIPDD98 pKa = 3.8QFANAAQDD106 pKa = 3.99NYY108 pKa = 10.65RR109 pKa = 11.84LWLAGVV115 pKa = 3.81

Molecular weight: 12.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0C7NAS4|A0A0C7NAS4_9SACH LALA0S15e00716g1_1 OS=Lachancea lanzarotensis OX=1245769 GN=LALA0_S15e00716g PE=3 SV=1
MM1 pKa = 7.1RR2 pKa = 11.84AKK4 pKa = 9.09WRR6 pKa = 11.84KK7 pKa = 8.87KK8 pKa = 8.73RR9 pKa = 11.84VRR11 pKa = 11.84RR12 pKa = 11.84LKK14 pKa = 9.71RR15 pKa = 11.84KK16 pKa = 8.27RR17 pKa = 11.84RR18 pKa = 11.84KK19 pKa = 9.19VRR21 pKa = 11.84ARR23 pKa = 11.84SKK25 pKa = 10.98

Molecular weight: 3.34 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5055

0

5055

2472229

25

4925

489.1

54.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.72 ± 0.03

1.262 ± 0.013

5.828 ± 0.026

6.563 ± 0.033

4.382 ± 0.02

5.591 ± 0.032

2.26 ± 0.013

5.379 ± 0.022

6.408 ± 0.027

9.878 ± 0.04

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.991 ± 0.01

4.835 ± 0.018

4.468 ± 0.024

4.343 ± 0.032

5.038 ± 0.022

8.969 ± 0.05

5.623 ± 0.024

6.325 ± 0.023

1.091 ± 0.01

3.047 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski