Mus musculus papillomavirus type 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Pipapillomavirus; Pipapillomavirus 2

Average proteome isoelectric point is 5.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D9D5K4|D9D5K4_9PAPI Replication protein E1 OS=Mus musculus papillomavirus type 1 OX=763552 GN=E1 PE=2 SV=1
MM1 pKa = 7.28QGPLPTIADD10 pKa = 3.52IEE12 pKa = 4.28IQNLDD17 pKa = 3.37SLLGVGEE24 pKa = 4.56PDD26 pKa = 3.68LPDD29 pKa = 3.57VGSSSLSPDD38 pKa = 3.06SLGEE42 pKa = 4.0EE43 pKa = 4.33EE44 pKa = 4.5EE45 pKa = 5.15LEE47 pKa = 4.56LEE49 pKa = 4.64TIDD52 pKa = 3.96VDD54 pKa = 3.81PYY56 pKa = 10.76RR57 pKa = 11.84IKK59 pKa = 8.15TTCFCCDD66 pKa = 2.86TVLRR70 pKa = 11.84FIIVTGDD77 pKa = 3.53DD78 pKa = 3.29SVKK81 pKa = 10.72AFEE84 pKa = 4.86SLLLQDD90 pKa = 4.85LSFVCPHH97 pKa = 6.56CVASYY102 pKa = 10.61VNLRR106 pKa = 11.84NGKK109 pKa = 9.08RR110 pKa = 3.24

Molecular weight: 12.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D9D5K3|D9D5K3_9PAPI Protein E7 OS=Mus musculus papillomavirus type 1 OX=763552 GN=E7 PE=2 SV=1
MM1 pKa = 7.92EE2 pKa = 5.32IGKK5 pKa = 10.41GYY7 pKa = 7.81TLEE10 pKa = 3.99EE11 pKa = 3.9VLRR14 pKa = 11.84YY15 pKa = 9.76SNKK18 pKa = 10.37DD19 pKa = 3.09VVDD22 pKa = 4.27FHH24 pKa = 7.01LSCAFCSTTMDD35 pKa = 3.6HH36 pKa = 6.39NEE38 pKa = 3.76KK39 pKa = 10.85ARR41 pKa = 11.84FIQAKK46 pKa = 8.37LKK48 pKa = 10.8CVVRR52 pKa = 11.84DD53 pKa = 3.89FAFKK57 pKa = 10.36GACIVCRR64 pKa = 11.84RR65 pKa = 11.84QLACKK70 pKa = 9.91EE71 pKa = 4.24KK72 pKa = 10.45LLHH75 pKa = 5.84TRR77 pKa = 11.84VTGEE81 pKa = 3.85ADD83 pKa = 3.82LVEE86 pKa = 5.0CMAGKK91 pKa = 10.3NIVFVTVRR99 pKa = 11.84CVTCLALLTASEE111 pKa = 4.33KK112 pKa = 10.88LDD114 pKa = 3.74AKK116 pKa = 11.02ACGLPFHH123 pKa = 6.97LVRR126 pKa = 11.84HH127 pKa = 5.58MWRR130 pKa = 11.84GYY132 pKa = 10.84CGFCKK137 pKa = 10.18PLLL140 pKa = 3.97

Molecular weight: 15.8 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

2432

105

620

347.4

38.72

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.387 ± 0.691

2.097 ± 0.635

6.538 ± 0.443

5.921 ± 0.459

4.359 ± 0.478

7.237 ± 0.756

1.85 ± 0.269

4.4 ± 0.68

4.811 ± 0.773

8.758 ± 0.846

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.809 ± 0.336

4.77 ± 0.594

6.373 ± 0.985

4.071 ± 0.556

5.839 ± 0.281

7.936 ± 0.835

6.908 ± 0.345

6.661 ± 0.941

1.234 ± 0.361

3.043 ± 0.508
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski