Sida leaf curl alphasatellite

Taxonomy: Viruses; Alphasatellitidae; Geminialphasatellitinae; Colecusatellite

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q2WCK9|Q2WCK9_9VIRU Replication protein OS=Sida leaf curl alphasatellite OX=2169843 GN=rep PE=4 SV=1
MM1 pKa = 7.77PALKK5 pKa = 10.33AQWWCFTVFFLSSTAPDD22 pKa = 3.82LVPLFEE28 pKa = 4.5NTHH31 pKa = 4.91VSYY34 pKa = 11.22ACWQEE39 pKa = 4.11EE40 pKa = 4.2EE41 pKa = 4.78SPTTRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84HH49 pKa = 4.54LQGYY53 pKa = 8.29LQLKK57 pKa = 7.47GQRR60 pKa = 11.84TLNQVKK66 pKa = 10.45AFFGDD71 pKa = 4.34LNPHH75 pKa = 6.36LEE77 pKa = 4.05KK78 pKa = 10.69QRR80 pKa = 11.84ARR82 pKa = 11.84KK83 pKa = 7.6TDD85 pKa = 3.62EE86 pKa = 4.08ACDD89 pKa = 3.6YY90 pKa = 11.18CMKK93 pKa = 10.72EE94 pKa = 4.07EE95 pKa = 4.24TRR97 pKa = 11.84VSGPFEE103 pKa = 4.33FGDD106 pKa = 3.87YY107 pKa = 10.5CPSGSHH113 pKa = 6.46KK114 pKa = 10.13RR115 pKa = 11.84RR116 pKa = 11.84QRR118 pKa = 11.84EE119 pKa = 3.79LVIRR123 pKa = 11.84SPVRR127 pKa = 11.84MAEE130 pKa = 4.07EE131 pKa = 4.09NPSVFRR137 pKa = 11.84RR138 pKa = 11.84VKK140 pKa = 10.51AKK142 pKa = 10.22LAEE145 pKa = 4.12EE146 pKa = 4.47EE147 pKa = 4.19FQKK150 pKa = 9.65TARR153 pKa = 11.84EE154 pKa = 3.95IQILDD159 pKa = 3.61LKK161 pKa = 10.69SWQLRR166 pKa = 11.84LKK168 pKa = 9.57TLLDD172 pKa = 4.1RR173 pKa = 11.84DD174 pKa = 3.84PDD176 pKa = 3.55DD177 pKa = 4.23RR178 pKa = 11.84TIFWVYY184 pKa = 10.74GPTGGEE190 pKa = 4.17GKK192 pKa = 8.47STFARR197 pKa = 11.84DD198 pKa = 3.99LYY200 pKa = 11.15RR201 pKa = 11.84SGSWFYY207 pKa = 11.09TRR209 pKa = 11.84GGSADD214 pKa = 3.47NVSYY218 pKa = 10.73QYY220 pKa = 10.49IGCLGNNIVFDD231 pKa = 3.87IPRR234 pKa = 11.84DD235 pKa = 3.6KK236 pKa = 10.91KK237 pKa = 11.07DD238 pKa = 3.31YY239 pKa = 10.37LQYY242 pKa = 11.61SLIEE246 pKa = 4.03MFKK249 pKa = 11.15DD250 pKa = 3.29RR251 pKa = 11.84LIVSNKK257 pKa = 9.63YY258 pKa = 9.28EE259 pKa = 4.23PLMAPLINCIHH270 pKa = 5.9VVVMSNFMPDD280 pKa = 3.4FEE282 pKa = 6.58KK283 pKa = 10.46ISQDD287 pKa = 3.06RR288 pKa = 11.84VHH290 pKa = 7.04VIPCRR295 pKa = 11.84PCGVCLKK302 pKa = 10.5HH303 pKa = 7.91HH304 pKa = 6.42MIEE307 pKa = 4.46MKK309 pKa = 10.62CEE311 pKa = 3.89EE312 pKa = 4.4YY313 pKa = 11.21LDD315 pKa = 3.8

Molecular weight: 36.88 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q2WCK9|Q2WCK9_9VIRU Replication protein OS=Sida leaf curl alphasatellite OX=2169843 GN=rep PE=4 SV=1
MM1 pKa = 7.77PALKK5 pKa = 10.33AQWWCFTVFFLSSTAPDD22 pKa = 3.82LVPLFEE28 pKa = 4.5NTHH31 pKa = 4.91VSYY34 pKa = 11.22ACWQEE39 pKa = 4.11EE40 pKa = 4.2EE41 pKa = 4.78SPTTRR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84HH49 pKa = 4.54LQGYY53 pKa = 8.29LQLKK57 pKa = 7.47GQRR60 pKa = 11.84TLNQVKK66 pKa = 10.45AFFGDD71 pKa = 4.34LNPHH75 pKa = 6.36LEE77 pKa = 4.05KK78 pKa = 10.69QRR80 pKa = 11.84ARR82 pKa = 11.84KK83 pKa = 7.6TDD85 pKa = 3.62EE86 pKa = 4.08ACDD89 pKa = 3.6YY90 pKa = 11.18CMKK93 pKa = 10.72EE94 pKa = 4.07EE95 pKa = 4.24TRR97 pKa = 11.84VSGPFEE103 pKa = 4.33FGDD106 pKa = 3.87YY107 pKa = 10.5CPSGSHH113 pKa = 6.46KK114 pKa = 10.13RR115 pKa = 11.84RR116 pKa = 11.84QRR118 pKa = 11.84EE119 pKa = 3.79LVIRR123 pKa = 11.84SPVRR127 pKa = 11.84MAEE130 pKa = 4.07EE131 pKa = 4.09NPSVFRR137 pKa = 11.84RR138 pKa = 11.84VKK140 pKa = 10.51AKK142 pKa = 10.22LAEE145 pKa = 4.12EE146 pKa = 4.47EE147 pKa = 4.19FQKK150 pKa = 9.65TARR153 pKa = 11.84EE154 pKa = 3.95IQILDD159 pKa = 3.61LKK161 pKa = 10.69SWQLRR166 pKa = 11.84LKK168 pKa = 9.57TLLDD172 pKa = 4.1RR173 pKa = 11.84DD174 pKa = 3.84PDD176 pKa = 3.55DD177 pKa = 4.23RR178 pKa = 11.84TIFWVYY184 pKa = 10.74GPTGGEE190 pKa = 4.17GKK192 pKa = 8.47STFARR197 pKa = 11.84DD198 pKa = 3.99LYY200 pKa = 11.15RR201 pKa = 11.84SGSWFYY207 pKa = 11.09TRR209 pKa = 11.84GGSADD214 pKa = 3.47NVSYY218 pKa = 10.73QYY220 pKa = 10.49IGCLGNNIVFDD231 pKa = 3.87IPRR234 pKa = 11.84DD235 pKa = 3.6KK236 pKa = 10.91KK237 pKa = 11.07DD238 pKa = 3.31YY239 pKa = 10.37LQYY242 pKa = 11.61SLIEE246 pKa = 4.03MFKK249 pKa = 11.15DD250 pKa = 3.29RR251 pKa = 11.84LIVSNKK257 pKa = 9.63YY258 pKa = 9.28EE259 pKa = 4.23PLMAPLINCIHH270 pKa = 5.9VVVMSNFMPDD280 pKa = 3.4FEE282 pKa = 6.58KK283 pKa = 10.46ISQDD287 pKa = 3.06RR288 pKa = 11.84VHH290 pKa = 7.04VIPCRR295 pKa = 11.84PCGVCLKK302 pKa = 10.5HH303 pKa = 7.91HH304 pKa = 6.42MIEE307 pKa = 4.46MKK309 pKa = 10.62CEE311 pKa = 3.89EE312 pKa = 4.4YY313 pKa = 11.21LDD315 pKa = 3.8

Molecular weight: 36.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

315

315

315

315.0

36.88

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.444 ± 0.0

3.492 ± 0.0

6.032 ± 0.0

7.302 ± 0.0

5.397 ± 0.0

5.079 ± 0.0

2.54 ± 0.0

4.444 ± 0.0

6.349 ± 0.0

8.571 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.857 ± 0.0

3.175 ± 0.0

5.397 ± 0.0

4.444 ± 0.0

7.937 ± 0.0

6.032 ± 0.0

4.444 ± 0.0

6.032 ± 0.0

1.905 ± 0.0

4.127 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski