Changjiang tombus-like virus 17

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 8.26

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KFU6|A0A1L3KFU6_9VIRU RNA-directed RNA polymerase OS=Changjiang tombus-like virus 17 OX=1922810 PE=4 SV=1
MM1 pKa = 6.95YY2 pKa = 10.19RR3 pKa = 11.84GFRR6 pKa = 11.84RR7 pKa = 11.84RR8 pKa = 11.84RR9 pKa = 11.84YY10 pKa = 8.82EE11 pKa = 3.52QAKK14 pKa = 9.94QNLSISGPLIDD25 pKa = 4.99SRR27 pKa = 11.84VKK29 pKa = 10.34MFVKK33 pKa = 10.04MEE35 pKa = 4.56GIKK38 pKa = 10.61FSSEE42 pKa = 4.17KK43 pKa = 10.46INPSCRR49 pKa = 11.84AIQFRR54 pKa = 11.84SPEE57 pKa = 3.88YY58 pKa = 9.87QLQVACFIKK67 pKa = 10.49PIEE70 pKa = 4.26HH71 pKa = 7.32LLYY74 pKa = 10.4CSSGPYY80 pKa = 9.55PYY82 pKa = 9.8PASQFIAKK90 pKa = 9.36NLNGVEE96 pKa = 4.02RR97 pKa = 11.84AQLLWEE103 pKa = 4.96KK104 pKa = 10.4YY105 pKa = 10.48ANLPGCEE112 pKa = 3.91ILMLDD117 pKa = 3.9ASRR120 pKa = 11.84FDD122 pKa = 3.38GHH124 pKa = 5.07VTPRR128 pKa = 11.84LNSIEE133 pKa = 3.97EE134 pKa = 4.04HH135 pKa = 7.04FYY137 pKa = 8.6TTICPDD143 pKa = 3.29PFFRR147 pKa = 11.84SLLKK151 pKa = 10.36ARR153 pKa = 11.84KK154 pKa = 8.72VNKK157 pKa = 10.04GSAKK161 pKa = 10.3GADD164 pKa = 3.66FSVSYY169 pKa = 10.01SLKK172 pKa = 8.99GGRR175 pKa = 11.84MSGDD179 pKa = 3.2MDD181 pKa = 4.05TASSNCLLMSSMLALLGSTSCLSYY205 pKa = 11.42DD206 pKa = 3.84FLVDD210 pKa = 3.33GDD212 pKa = 4.49DD213 pKa = 4.08SVFFYY218 pKa = 11.03LGDD221 pKa = 3.78TLTDD225 pKa = 3.34DD226 pKa = 4.43HH227 pKa = 8.01IKK229 pKa = 10.8EE230 pKa = 4.24FFLEE234 pKa = 4.69CGMEE238 pKa = 3.89MKK240 pKa = 9.81IDD242 pKa = 3.25KK243 pKa = 8.43RR244 pKa = 11.84TRR246 pKa = 11.84DD247 pKa = 3.33FWSLDD252 pKa = 3.34FCQGKK257 pKa = 8.47PVSLPGGISLVRR269 pKa = 11.84DD270 pKa = 4.18PIKK273 pKa = 11.08VMSKK277 pKa = 10.76AGINDD282 pKa = 3.63KK283 pKa = 10.9FSDD286 pKa = 3.56PLLRR290 pKa = 11.84CRR292 pKa = 11.84ILEE295 pKa = 4.33VICLGEE301 pKa = 3.87LSLVKK306 pKa = 10.42GCPILQHH313 pKa = 6.3FFDD316 pKa = 4.49RR317 pKa = 11.84LLYY320 pKa = 9.35IARR323 pKa = 11.84RR324 pKa = 11.84SLGKK328 pKa = 10.23KK329 pKa = 8.97KK330 pKa = 10.09RR331 pKa = 11.84KK332 pKa = 7.83KK333 pKa = 10.72LKK335 pKa = 9.44MEE337 pKa = 3.69WMSYY341 pKa = 6.9RR342 pKa = 11.84QRR344 pKa = 11.84NEE346 pKa = 3.93FRR348 pKa = 11.84GEE350 pKa = 3.08WWKK353 pKa = 11.3RR354 pKa = 11.84EE355 pKa = 3.91VLPITPEE362 pKa = 3.59ARR364 pKa = 11.84EE365 pKa = 4.04TLSRR369 pKa = 11.84AWGISIEE376 pKa = 4.22EE377 pKa = 3.93QLSLEE382 pKa = 4.08KK383 pKa = 10.87QIDD386 pKa = 3.96GFDD389 pKa = 4.45FDD391 pKa = 5.18PMSTPIRR398 pKa = 11.84GEE400 pKa = 4.0GVDD403 pKa = 3.56VSNWLFDD410 pKa = 3.33AFTRR414 pKa = 11.84EE415 pKa = 4.26SFF417 pKa = 3.4

Molecular weight: 47.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KFU6|A0A1L3KFU6_9VIRU RNA-directed RNA polymerase OS=Changjiang tombus-like virus 17 OX=1922810 PE=4 SV=1
MM1 pKa = 7.88RR2 pKa = 11.84FLTNVPSVYY11 pKa = 10.31EE12 pKa = 4.19GFSGRR17 pKa = 11.84LRR19 pKa = 11.84SWITEE24 pKa = 3.45NRR26 pKa = 11.84RR27 pKa = 11.84NIILGSFCLIASGLTFRR44 pKa = 11.84KK45 pKa = 8.39TSQLTLLFRR54 pKa = 11.84SLLGLLGAGLSFTLGNNLTNLVSLQLEE81 pKa = 4.34NKK83 pKa = 10.09AKK85 pKa = 9.57IARR88 pKa = 11.84RR89 pKa = 11.84GTRR92 pKa = 11.84GKK94 pKa = 9.31MRR96 pKa = 11.84AIRR99 pKa = 11.84HH100 pKa = 5.27RR101 pKa = 11.84RR102 pKa = 11.84VPLTNLHH109 pKa = 6.51FEE111 pKa = 4.28VEE113 pKa = 4.53SLCFDD118 pKa = 4.14GLRR121 pKa = 11.84NSSDD125 pKa = 3.15VTDD128 pKa = 3.65IARR131 pKa = 11.84RR132 pKa = 11.84LKK134 pKa = 10.23QIAMSSGLEE143 pKa = 4.16VYY145 pKa = 10.94SDD147 pKa = 3.98DD148 pKa = 3.53GTVNKK153 pKa = 9.95VPVKK157 pKa = 9.78DD158 pKa = 4.12LNMALVDD165 pKa = 4.1SVVRR169 pKa = 11.84DD170 pKa = 4.02CVLHH174 pKa = 7.75ISDD177 pKa = 5.08PDD179 pKa = 3.51VLRR182 pKa = 11.84DD183 pKa = 3.57IEE185 pKa = 4.18VDD187 pKa = 3.16AEE189 pKa = 4.05NRR191 pKa = 11.84DD192 pKa = 3.32MAMRR196 pKa = 11.84RR197 pKa = 11.84LLSLGNAGQILSGWEE212 pKa = 3.76HH213 pKa = 6.44LKK215 pKa = 10.57ISALKK220 pKa = 10.34CGAAILGRR228 pKa = 11.84SYY230 pKa = 11.41LVGRR234 pKa = 11.84NN235 pKa = 3.28

Molecular weight: 26.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

994

235

417

331.3

36.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.841 ± 1.425

1.911 ± 0.456

5.332 ± 0.485

4.628 ± 0.74

5.131 ± 0.747

6.64 ± 0.58

1.107 ± 0.254

5.634 ± 0.169

5.332 ± 0.797

11.066 ± 1.581

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.918 ± 0.211

4.225 ± 0.821

4.93 ± 1.288

2.213 ± 0.315

6.942 ± 1.39

9.557 ± 0.237

6.237 ± 1.986

5.231 ± 0.774

1.207 ± 0.223

2.918 ± 0.61
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski