Capybara microvirus Cap3_SP_668

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W913|A0A4P8W913_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_668 OX=2585489 PE=4 SV=1
MM1 pKa = 7.29EE2 pKa = 5.49VINIFQYY9 pKa = 10.78VPSEE13 pKa = 4.12GTSFTEE19 pKa = 4.48PSQCIPDD26 pKa = 3.53QTLSVQEE33 pKa = 3.79LLARR37 pKa = 11.84FSRR40 pKa = 11.84GYY42 pKa = 10.51SVDD45 pKa = 3.75VPIHH49 pKa = 7.26DD50 pKa = 5.18DD51 pKa = 3.68YY52 pKa = 11.96EE53 pKa = 4.97SYY55 pKa = 11.03EE56 pKa = 4.15DD57 pKa = 4.46SFEE60 pKa = 3.87EE61 pKa = 4.65DD62 pKa = 4.44AIDD65 pKa = 5.74GIQDD69 pKa = 3.6LSDD72 pKa = 3.23VDD74 pKa = 3.42ILRR77 pKa = 11.84EE78 pKa = 3.91QIHH81 pKa = 5.24MQKK84 pKa = 10.71KK85 pKa = 9.0LAQTSDD91 pKa = 3.27VMISEE96 pKa = 4.42VTDD99 pKa = 3.6KK100 pKa = 10.92EE101 pKa = 4.15RR102 pKa = 11.84SDD104 pKa = 3.97AKK106 pKa = 11.33GNDD109 pKa = 3.45EE110 pKa = 4.67SSASS114 pKa = 3.49

Molecular weight: 12.86 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W5F6|A0A4P8W5F6_9VIRU Major capsid protein OS=Capybara microvirus Cap3_SP_668 OX=2585489 PE=3 SV=1
MM1 pKa = 7.39KK2 pKa = 10.02CVSPVTIRR10 pKa = 11.84NPNFGNISKK19 pKa = 10.13IGYY22 pKa = 8.06DD23 pKa = 3.02SMYY26 pKa = 10.49IGVPCGKK33 pKa = 9.91CLPCLQNKK41 pKa = 9.26RR42 pKa = 11.84NDD44 pKa = 2.8WYY46 pKa = 11.36LRR48 pKa = 11.84LLSEE52 pKa = 4.54YY53 pKa = 10.32RR54 pKa = 11.84SSTNSCFVTLTYY66 pKa = 10.75SDD68 pKa = 4.56EE69 pKa = 4.41NCDD72 pKa = 3.48GSVHH76 pKa = 6.63KK77 pKa = 10.69KK78 pKa = 10.49DD79 pKa = 3.14IQEE82 pKa = 3.8FFARR86 pKa = 11.84LRR88 pKa = 11.84KK89 pKa = 9.44RR90 pKa = 11.84LQYY93 pKa = 10.93HH94 pKa = 7.0LGTVGLRR101 pKa = 11.84FFCVSEE107 pKa = 4.15YY108 pKa = 11.02GPKK111 pKa = 7.62THH113 pKa = 7.15RR114 pKa = 11.84PHH116 pKa = 5.56YY117 pKa = 7.76HH118 pKa = 5.32TLIFGYY124 pKa = 9.17PDD126 pKa = 3.93CDD128 pKa = 3.21INHH131 pKa = 6.67YY132 pKa = 9.92IEE134 pKa = 4.58KK135 pKa = 9.66SWYY138 pKa = 9.88LGFVCVTNININRR151 pKa = 11.84IRR153 pKa = 11.84YY154 pKa = 6.21CAKK157 pKa = 10.09YY158 pKa = 10.05CISKK162 pKa = 10.73NDD164 pKa = 3.34VPEE167 pKa = 4.56NMDD170 pKa = 4.04NNFMLCSRR178 pKa = 11.84RR179 pKa = 11.84PAIGDD184 pKa = 3.49SFLTNKK190 pKa = 9.39VKK192 pKa = 10.5SFYY195 pKa = 10.62SKK197 pKa = 9.98RR198 pKa = 11.84HH199 pKa = 4.62GKK201 pKa = 9.75IIYY204 pKa = 9.1NDD206 pKa = 3.28HH207 pKa = 5.83GVNYY211 pKa = 10.1SLPRR215 pKa = 11.84RR216 pKa = 11.84WKK218 pKa = 10.4EE219 pKa = 3.53KK220 pKa = 10.68LLSEE224 pKa = 4.14KK225 pKa = 10.39QKK227 pKa = 11.41NEE229 pKa = 3.49IKK231 pKa = 10.13HH232 pKa = 5.97NSMIYY237 pKa = 10.96NNDD240 pKa = 3.43CYY242 pKa = 11.13KK243 pKa = 10.74KK244 pKa = 9.7YY245 pKa = 9.21QEE247 pKa = 4.88KK248 pKa = 9.9YY249 pKa = 9.31AAYY252 pKa = 10.22DD253 pKa = 3.62EE254 pKa = 4.92AALAHH259 pKa = 6.48GNPIMSQLQIDD270 pKa = 3.96QKK272 pKa = 10.98LEE274 pKa = 4.05SMKK277 pKa = 10.67KK278 pKa = 10.44YY279 pKa = 10.38LDD281 pKa = 3.69KK282 pKa = 10.58DD283 pKa = 3.87TKK285 pKa = 10.86FKK287 pKa = 11.17LL288 pKa = 3.56

Molecular weight: 33.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1203

114

516

300.8

34.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.403 ± 0.906

1.413 ± 0.872

5.653 ± 1.094

5.902 ± 0.941

3.99 ± 0.66

5.819 ± 1.029

2.078 ± 0.42

5.902 ± 0.693

6.733 ± 1.097

8.562 ± 1.085

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.159 ± 0.724

5.569 ± 1.077

4.572 ± 0.647

5.653 ± 1.0

4.655 ± 0.443

9.476 ± 0.934

4.406 ± 0.431

4.572 ± 0.459

1.164 ± 0.254

5.32 ± 0.693
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski