Thermobaculum terrenum (strain ATCC BAA-798 / YNP1)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Chloroflexi incertae sedis; Thermobaculum; Thermobaculum terrenum

Average proteome isoelectric point is 6.4

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2827 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D1CGV8|D1CGV8_THET1 Oligopeptide/dipeptide ABC transporter ATPase subunit OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) OX=525904 GN=Tter_2076 PE=4 SV=1
MM1 pKa = 6.98TRR3 pKa = 11.84KK4 pKa = 8.58LTGRR8 pKa = 11.84LATLLMLLAALSMAALATGNSVPPSGLSTSTSSIGPNALKK48 pKa = 10.41PSQCASLNLTNLLVVNGFGFSPHH71 pKa = 6.13VPTLILGSSGPDD83 pKa = 3.25YY84 pKa = 10.96IFAGIDD90 pKa = 3.38DD91 pKa = 4.36DD92 pKa = 5.98CIVAGAGNDD101 pKa = 4.09FISGSDD107 pKa = 3.42GDD109 pKa = 5.13DD110 pKa = 3.66IILAGSGADD119 pKa = 3.64YY120 pKa = 11.51VNGGPGYY127 pKa = 9.65DD128 pKa = 2.69ICYY131 pKa = 10.42GVFDD135 pKa = 5.25PGDD138 pKa = 3.44TAVGCEE144 pKa = 3.82VRR146 pKa = 11.84LPP148 pKa = 3.65

Molecular weight: 14.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D1CCJ8|D1CCJ8_THET1 Cell division protein FtsW OS=Thermobaculum terrenum (strain ATCC BAA-798 / YNP1) OX=525904 GN=Tter_1607 PE=4 SV=1
MM1 pKa = 7.38RR2 pKa = 11.84QANGEE7 pKa = 4.03GTVYY11 pKa = 10.44RR12 pKa = 11.84RR13 pKa = 11.84RR14 pKa = 11.84DD15 pKa = 3.84GRR17 pKa = 11.84WVAAVVHH24 pKa = 6.4AGRR27 pKa = 11.84RR28 pKa = 11.84ISRR31 pKa = 11.84YY32 pKa = 9.09AKK34 pKa = 9.2TRR36 pKa = 11.84RR37 pKa = 11.84EE38 pKa = 3.91AQKK41 pKa = 10.09QLRR44 pKa = 11.84EE45 pKa = 4.08LLEE48 pKa = 4.1AAAEE52 pKa = 4.15HH53 pKa = 6.88RR54 pKa = 11.84LVPPNKK60 pKa = 9.21LTLEE64 pKa = 4.08QYY66 pKa = 9.61LAEE69 pKa = 4.01WLEE72 pKa = 3.91VRR74 pKa = 11.84SRR76 pKa = 11.84EE77 pKa = 4.08LRR79 pKa = 11.84VSTRR83 pKa = 11.84VNYY86 pKa = 9.67QRR88 pKa = 11.84LIEE91 pKa = 4.0QHH93 pKa = 5.95ICPALGGRR101 pKa = 11.84RR102 pKa = 11.84LQALAALEE110 pKa = 4.0LSRR113 pKa = 11.84WLAGLGEE120 pKa = 4.3RR121 pKa = 11.84LPRR124 pKa = 11.84RR125 pKa = 11.84AQEE128 pKa = 4.3AYY130 pKa = 10.54ALLHH134 pKa = 6.46KK135 pKa = 10.66ALADD139 pKa = 3.68AVRR142 pKa = 11.84LGLLATNPLDD152 pKa = 3.61RR153 pKa = 11.84VEE155 pKa = 4.39PPKK158 pKa = 10.21HH159 pKa = 4.65QRR161 pKa = 11.84RR162 pKa = 11.84RR163 pKa = 11.84PTLPARR169 pKa = 11.84DD170 pKa = 3.85QIALLIAALEE180 pKa = 4.18AGKK183 pKa = 10.49AGWYY187 pKa = 10.02SEE189 pKa = 4.82LLLFLLGSGCRR200 pKa = 11.84IGEE203 pKa = 4.02ALGLEE208 pKa = 4.24WGDD211 pKa = 3.62VDD213 pKa = 3.51WQEE216 pKa = 3.78GSVRR220 pKa = 11.84ISRR223 pKa = 11.84QLLEE227 pKa = 4.29VGGEE231 pKa = 4.18VHH233 pKa = 7.04EE234 pKa = 4.91SPPKK238 pKa = 9.38SRR240 pKa = 11.84AGEE243 pKa = 3.92RR244 pKa = 11.84VIALPAFALEE254 pKa = 4.13ALRR257 pKa = 11.84QQRR260 pKa = 11.84AKK262 pKa = 10.93KK263 pKa = 9.55LGKK266 pKa = 10.2YY267 pKa = 9.77CFLSSTGTTPCRR279 pKa = 11.84RR280 pKa = 11.84NVLRR284 pKa = 11.84ALHH287 pKa = 6.19AVCAEE292 pKa = 4.06LGLPRR297 pKa = 11.84LRR299 pKa = 11.84IHH301 pKa = 7.28DD302 pKa = 4.27LRR304 pKa = 11.84HH305 pKa = 4.33VHH307 pKa = 6.99ASLLAHH313 pKa = 6.89AGVPPKK319 pKa = 10.35VAQSRR324 pKa = 11.84LGHH327 pKa = 6.01SSPMVTLQVYY337 pKa = 7.19QHH339 pKa = 6.17VLDD342 pKa = 4.44GADD345 pKa = 3.36RR346 pKa = 11.84EE347 pKa = 4.3AALRR351 pKa = 11.84LEE353 pKa = 4.41RR354 pKa = 11.84VLGG357 pKa = 3.87

Molecular weight: 39.95 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2827

0

2827

935529

31

2240

330.9

36.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.905 ± 0.044

0.891 ± 0.015

5.212 ± 0.034

6.492 ± 0.054

3.321 ± 0.029

7.857 ± 0.041

2.099 ± 0.02

6.107 ± 0.044

3.622 ± 0.038

10.798 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.291 ± 0.017

2.927 ± 0.028

5.202 ± 0.035

3.484 ± 0.028

6.83 ± 0.045

6.343 ± 0.049

4.963 ± 0.028

7.824 ± 0.04

1.608 ± 0.022

3.223 ± 0.026
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski