Ctenophore-associated circular genome 3

Taxonomy: Viruses; Satellites; DNA satellites; Single stranded DNA satellites

Average proteome isoelectric point is 6.66

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A141MJB5|A0A141MJB5_9VIRU ATP-dependent helicase Rep OS=Ctenophore-associated circular genome 3 OX=1778572 PE=3 SV=1
MM1 pKa = 7.57VDD3 pKa = 3.12SQGTRR8 pKa = 11.84IVNYY12 pKa = 9.36VFTWNNYY19 pKa = 7.47TDD21 pKa = 3.78DD22 pKa = 3.76VKK24 pKa = 11.57AFISNFANDD33 pKa = 3.33YY34 pKa = 10.2CKK36 pKa = 9.84WLVYY40 pKa = 10.49GEE42 pKa = 4.35EE43 pKa = 4.3VGEE46 pKa = 4.32SGTPHH51 pKa = 6.57LQGCLSLRR59 pKa = 11.84VKK61 pKa = 10.64KK62 pKa = 10.63RR63 pKa = 11.84ITQLRR68 pKa = 11.84KK69 pKa = 10.08LGFSCHH75 pKa = 6.19LEE77 pKa = 3.98AMKK80 pKa = 10.64GSPKK84 pKa = 10.0QAIAYY89 pKa = 7.33CKK91 pKa = 10.02KK92 pKa = 10.33DD93 pKa = 3.35GNVTEE98 pKa = 5.01FGDD101 pKa = 3.52VTRR104 pKa = 11.84GQGEE108 pKa = 4.08RR109 pKa = 11.84TDD111 pKa = 3.79LKK113 pKa = 10.71RR114 pKa = 11.84ACEE117 pKa = 4.27LIKK120 pKa = 10.54EE121 pKa = 4.38GQGMKK126 pKa = 10.35AVLEE130 pKa = 4.35EE131 pKa = 4.39CPGVYY136 pKa = 9.85VRR138 pKa = 11.84YY139 pKa = 10.16SRR141 pKa = 11.84GLRR144 pKa = 11.84DD145 pKa = 3.33LALAANIAYY154 pKa = 9.32EE155 pKa = 4.11HH156 pKa = 6.23EE157 pKa = 4.41TTRR160 pKa = 11.84GIWVYY165 pKa = 10.79GKK167 pKa = 10.27SGVGKK172 pKa = 8.74SHH174 pKa = 6.15VVRR177 pKa = 11.84ATYY180 pKa = 10.17PDD182 pKa = 4.2YY183 pKa = 10.92FDD185 pKa = 5.07KK186 pKa = 11.26SQSKK190 pKa = 7.98WWDD193 pKa = 3.56GYY195 pKa = 10.17DD196 pKa = 3.46NEE198 pKa = 4.58RR199 pKa = 11.84VVVLDD204 pKa = 5.89DD205 pKa = 5.42LDD207 pKa = 4.36SDD209 pKa = 4.81CLGHH213 pKa = 6.5YY214 pKa = 9.67LKK216 pKa = 10.58RR217 pKa = 11.84WADD220 pKa = 3.47KK221 pKa = 10.68YY222 pKa = 10.87SCTGEE227 pKa = 4.35TKK229 pKa = 10.7GGTVKK234 pKa = 10.4LQHH237 pKa = 6.29RR238 pKa = 11.84VFVVTSNYY246 pKa = 10.01LPWALHH252 pKa = 5.42EE253 pKa = 4.24NEE255 pKa = 4.57MMAEE259 pKa = 4.54AISRR263 pKa = 11.84RR264 pKa = 11.84FTIYY268 pKa = 10.12HH269 pKa = 5.67KK270 pKa = 10.64RR271 pKa = 11.84NRR273 pKa = 11.84DD274 pKa = 3.36EE275 pKa = 5.27LLEE278 pKa = 4.19EE279 pKa = 4.74CEE281 pKa = 3.91ILTYY285 pKa = 10.82ADD287 pKa = 3.38RR288 pKa = 11.84HH289 pKa = 5.76NIII292 pKa = 4.56

Molecular weight: 33.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A141MJB5|A0A141MJB5_9VIRU ATP-dependent helicase Rep OS=Ctenophore-associated circular genome 3 OX=1778572 PE=3 SV=1
MM1 pKa = 7.57VDD3 pKa = 3.12SQGTRR8 pKa = 11.84IVNYY12 pKa = 9.36VFTWNNYY19 pKa = 7.47TDD21 pKa = 3.78DD22 pKa = 3.76VKK24 pKa = 11.57AFISNFANDD33 pKa = 3.33YY34 pKa = 10.2CKK36 pKa = 9.84WLVYY40 pKa = 10.49GEE42 pKa = 4.35EE43 pKa = 4.3VGEE46 pKa = 4.32SGTPHH51 pKa = 6.57LQGCLSLRR59 pKa = 11.84VKK61 pKa = 10.64KK62 pKa = 10.63RR63 pKa = 11.84ITQLRR68 pKa = 11.84KK69 pKa = 10.08LGFSCHH75 pKa = 6.19LEE77 pKa = 3.98AMKK80 pKa = 10.64GSPKK84 pKa = 10.0QAIAYY89 pKa = 7.33CKK91 pKa = 10.02KK92 pKa = 10.33DD93 pKa = 3.35GNVTEE98 pKa = 5.01FGDD101 pKa = 3.52VTRR104 pKa = 11.84GQGEE108 pKa = 4.08RR109 pKa = 11.84TDD111 pKa = 3.79LKK113 pKa = 10.71RR114 pKa = 11.84ACEE117 pKa = 4.27LIKK120 pKa = 10.54EE121 pKa = 4.38GQGMKK126 pKa = 10.35AVLEE130 pKa = 4.35EE131 pKa = 4.39CPGVYY136 pKa = 9.85VRR138 pKa = 11.84YY139 pKa = 10.16SRR141 pKa = 11.84GLRR144 pKa = 11.84DD145 pKa = 3.33LALAANIAYY154 pKa = 9.32EE155 pKa = 4.11HH156 pKa = 6.23EE157 pKa = 4.41TTRR160 pKa = 11.84GIWVYY165 pKa = 10.79GKK167 pKa = 10.27SGVGKK172 pKa = 8.74SHH174 pKa = 6.15VVRR177 pKa = 11.84ATYY180 pKa = 10.17PDD182 pKa = 4.2YY183 pKa = 10.92FDD185 pKa = 5.07KK186 pKa = 11.26SQSKK190 pKa = 7.98WWDD193 pKa = 3.56GYY195 pKa = 10.17DD196 pKa = 3.46NEE198 pKa = 4.58RR199 pKa = 11.84VVVLDD204 pKa = 5.89DD205 pKa = 5.42LDD207 pKa = 4.36SDD209 pKa = 4.81CLGHH213 pKa = 6.5YY214 pKa = 9.67LKK216 pKa = 10.58RR217 pKa = 11.84WADD220 pKa = 3.47KK221 pKa = 10.68YY222 pKa = 10.87SCTGEE227 pKa = 4.35TKK229 pKa = 10.7GGTVKK234 pKa = 10.4LQHH237 pKa = 6.29RR238 pKa = 11.84VFVVTSNYY246 pKa = 10.01LPWALHH252 pKa = 5.42EE253 pKa = 4.24NEE255 pKa = 4.57MMAEE259 pKa = 4.54AISRR263 pKa = 11.84RR264 pKa = 11.84FTIYY268 pKa = 10.12HH269 pKa = 5.67KK270 pKa = 10.64RR271 pKa = 11.84NRR273 pKa = 11.84DD274 pKa = 3.36EE275 pKa = 5.27LLEE278 pKa = 4.19EE279 pKa = 4.74CEE281 pKa = 3.91ILTYY285 pKa = 10.82ADD287 pKa = 3.38RR288 pKa = 11.84HH289 pKa = 5.76NIII292 pKa = 4.56

Molecular weight: 33.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

292

292

292

292.0

33.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.822 ± 0.0

3.082 ± 0.0

6.507 ± 0.0

7.192 ± 0.0

2.74 ± 0.0

8.219 ± 0.0

3.082 ± 0.0

4.11 ± 0.0

7.192 ± 0.0

7.877 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.712 ± 0.0

4.11 ± 0.0

1.712 ± 0.0

2.74 ± 0.0

6.849 ± 0.0

5.137 ± 0.0

5.822 ± 0.0

7.877 ± 0.0

2.397 ± 0.0

5.822 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski