Dickeya phage vB_DsoM_JA29

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Salmondvirus; Dickeya virus JA29

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 318 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A384ZXM6|A0A384ZXM6_9CAUD Uncharacterized protein OS=Dickeya phage vB_DsoM_JA29 OX=2283031 GN=JA29_297 PE=4 SV=1
MM1 pKa = 7.79SDD3 pKa = 3.11QEE5 pKa = 4.27QPYY8 pKa = 10.23SRR10 pKa = 11.84CTDD13 pKa = 3.29CGEE16 pKa = 4.75DD17 pKa = 3.32IEE19 pKa = 4.51EE20 pKa = 4.7GEE22 pKa = 5.63VYY24 pKa = 10.91GEE26 pKa = 3.9WDD28 pKa = 4.35DD29 pKa = 5.05LCEE32 pKa = 3.79SCYY35 pKa = 9.1YY36 pKa = 9.61QRR38 pKa = 11.84EE39 pKa = 4.16RR40 pKa = 11.84EE41 pKa = 4.33GRR43 pKa = 11.84GSS45 pKa = 3.16

Molecular weight: 5.3 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A384ZXI6|A0A384ZXI6_9CAUD Uncharacterized protein OS=Dickeya phage vB_DsoM_JA29 OX=2283031 GN=JA29_225 PE=4 SV=1
MM1 pKa = 7.34NPLHH5 pKa = 6.96ASQTAFYY12 pKa = 9.81VLGSITLLAHH22 pKa = 6.88LFSLVYY28 pKa = 9.99RR29 pKa = 11.84YY30 pKa = 9.26MKK32 pKa = 9.8IVEE35 pKa = 3.97MRR37 pKa = 11.84QKK39 pKa = 10.51RR40 pKa = 11.84RR41 pKa = 11.84AKK43 pKa = 9.61IAKK46 pKa = 9.42QKK48 pKa = 9.83TPLDD52 pKa = 3.66KK53 pKa = 10.91LRR55 pKa = 11.84SRR57 pKa = 11.84LKK59 pKa = 8.25QAKK62 pKa = 9.3RR63 pKa = 11.84EE64 pKa = 3.9AYY66 pKa = 9.64YY67 pKa = 10.47RR68 pKa = 11.84PKK70 pKa = 10.75KK71 pKa = 10.33LL72 pKa = 3.44

Molecular weight: 8.59 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

318

0

318

79552

33

1944

250.2

28.11

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.574 ± 0.164

1.096 ± 0.056

6.592 ± 0.16

6.813 ± 0.2

4.328 ± 0.108

5.977 ± 0.166

1.825 ± 0.066

6.097 ± 0.118

6.876 ± 0.241

8.219 ± 0.143

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.491 ± 0.069

4.842 ± 0.097

4.186 ± 0.103

3.43 ± 0.07

5.291 ± 0.097

7.032 ± 0.128

5.829 ± 0.163

6.953 ± 0.11

1.057 ± 0.046

3.492 ± 0.124
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski