Chitinophagaceae bacterium IBVUCB1

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; unclassified Chitinophagaceae

Average proteome isoelectric point is 6.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3055 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1Z5SFG6|A0A1Z5SFG6_9BACT Uncharacterized protein OS=Chitinophagaceae bacterium IBVUCB1 OX=1985173 GN=CAP35_12890 PE=4 SV=1
MM1 pKa = 8.23VIEE4 pKa = 4.25TEE6 pKa = 4.06IKK8 pKa = 10.3DD9 pKa = 3.59VLFNYY14 pKa = 9.15PVTFEE19 pKa = 5.2DD20 pKa = 3.35VDD22 pKa = 3.96NEE24 pKa = 4.08ILSEE28 pKa = 4.01TFYY31 pKa = 10.9IVTWNHH37 pKa = 5.49SEE39 pKa = 4.04PFIMAWDD46 pKa = 3.67FDD48 pKa = 3.57EE49 pKa = 4.4WQLVIQSKK57 pKa = 9.74APHH60 pKa = 5.5MAKK63 pKa = 10.32LFEE66 pKa = 4.05YY67 pKa = 10.99ALFKK71 pKa = 11.36VIDD74 pKa = 4.43DD75 pKa = 4.31YY76 pKa = 12.36NNGFCNFQQ84 pKa = 3.14

Molecular weight: 10.1 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1Z5SCG0|A0A1Z5SCG0_9BACT Uncharacterized protein OS=Chitinophagaceae bacterium IBVUCB1 OX=1985173 GN=CAP35_07225 PE=4 SV=1
MM1 pKa = 7.74RR2 pKa = 11.84KK3 pKa = 8.93GVSMRR8 pKa = 11.84GIGYY12 pKa = 9.48LLTISVSSVVRR23 pKa = 11.84YY24 pKa = 9.38IRR26 pKa = 11.84RR27 pKa = 11.84ISAVIAKK34 pKa = 7.33PTHH37 pKa = 6.35AEE39 pKa = 3.91CQQVYY44 pKa = 9.63EE45 pKa = 4.1VDD47 pKa = 3.38EE48 pKa = 4.21MQTYY52 pKa = 10.12IGSKK56 pKa = 8.9QEE58 pKa = 3.75VNRR61 pKa = 11.84VYY63 pKa = 10.92IMYY66 pKa = 9.86CINRR70 pKa = 11.84ATRR73 pKa = 11.84EE74 pKa = 4.12VISFIVGRR82 pKa = 11.84RR83 pKa = 11.84TKK85 pKa = 10.83EE86 pKa = 3.82NLNKK90 pKa = 10.21LVNAVLEE97 pKa = 4.14LSPKK101 pKa = 10.23RR102 pKa = 11.84ICTDD106 pKa = 2.63GLNIYY111 pKa = 9.97RR112 pKa = 11.84SIISPPLHH120 pKa = 6.38SVSKK124 pKa = 10.6YY125 pKa = 6.82GTNRR129 pKa = 11.84IEE131 pKa = 4.37RR132 pKa = 11.84KK133 pKa = 9.62NLSLRR138 pKa = 11.84TDD140 pKa = 4.0LKK142 pKa = 10.25RR143 pKa = 11.84LSRR146 pKa = 11.84RR147 pKa = 11.84TICFSRR153 pKa = 11.84SLPMLVACLRR163 pKa = 11.84IYY165 pKa = 10.69FWGG168 pKa = 3.71

Molecular weight: 19.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3055

0

3055

1028320

38

3714

336.6

37.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.967 ± 0.044

1.044 ± 0.016

5.29 ± 0.031

5.275 ± 0.056

4.372 ± 0.031

6.799 ± 0.05

1.982 ± 0.024

7.199 ± 0.037

6.74 ± 0.052

8.889 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.733 ± 0.026

5.643 ± 0.044

3.783 ± 0.027

3.83 ± 0.027

4.013 ± 0.031

5.92 ± 0.043

6.324 ± 0.083

6.489 ± 0.03

1.202 ± 0.017

4.506 ± 0.038
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski