Proteus phage PM 93

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Autographiviridae; Molineuxvirinae; Acadevirus; Proteus virus PM93

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 47 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0U2ZR64|A0A0U2ZR64_9CAUD Membrane protein OS=Proteus phage PM 93 OX=1560284 GN=PM93_0044 PE=4 SV=1
MM1 pKa = 7.69LNRR4 pKa = 11.84INIHH8 pKa = 6.43LKK10 pKa = 10.48LLSSKK15 pKa = 10.74KK16 pKa = 9.84DD17 pKa = 3.32VYY19 pKa = 10.91FNKK22 pKa = 9.5VWSTKK27 pKa = 10.0QGDD30 pKa = 3.73YY31 pKa = 11.1PFIIGIDD38 pKa = 3.37IDD40 pKa = 3.65GTMYY44 pKa = 11.04YY45 pKa = 9.83PDD47 pKa = 4.89GDD49 pKa = 4.21TMVSALNQIEE59 pKa = 4.16LAYY62 pKa = 10.65SKK64 pKa = 9.05WHH66 pKa = 6.3YY67 pKa = 9.25IQEE70 pKa = 4.22VLKK73 pKa = 10.1DD74 pKa = 3.19TFKK77 pKa = 10.86RR78 pKa = 11.84DD79 pKa = 3.47KK80 pKa = 10.33EE81 pKa = 4.19CLYY84 pKa = 10.26LTFQPIIEE92 pKa = 4.16LHH94 pKa = 6.09YY95 pKa = 11.2DD96 pKa = 3.58DD97 pKa = 6.29GSVKK101 pKa = 10.49EE102 pKa = 5.39LDD104 pKa = 4.08TKK106 pKa = 11.44DD107 pKa = 3.45DD108 pKa = 3.43WFSFDD113 pKa = 2.67WHH115 pKa = 6.67EE116 pKa = 4.6GYY118 pKa = 10.33DD119 pKa = 3.29WSLEE123 pKa = 3.84EE124 pKa = 5.27RR125 pKa = 11.84LNQLFFEE132 pKa = 4.62TEE134 pKa = 3.88QAGEE138 pKa = 3.91ALGDD142 pKa = 3.61NVEE145 pKa = 5.47DD146 pKa = 3.9LEE148 pKa = 4.47EE149 pKa = 4.09WLEE152 pKa = 4.2SNPLIWSWDD161 pKa = 3.74NVSMSS166 pKa = 3.28

Molecular weight: 19.76 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0U2ZJL6|A0A0U2ZJL6_9CAUD Uncharacterized protein OS=Proteus phage PM 93 OX=1560284 GN=PM93_0041 PE=4 SV=1
MM1 pKa = 7.81RR2 pKa = 11.84YY3 pKa = 10.52DD4 pKa = 3.26MKK6 pKa = 10.76LNKK9 pKa = 8.86MRR11 pKa = 11.84KK12 pKa = 4.62TAKK15 pKa = 10.36YY16 pKa = 8.45VMCYY20 pKa = 8.11GARR23 pKa = 11.84YY24 pKa = 6.8EE25 pKa = 4.17TFEE28 pKa = 6.1AILLAKK34 pKa = 9.63KK35 pKa = 10.09AKK37 pKa = 9.55KK38 pKa = 10.14RR39 pKa = 11.84YY40 pKa = 8.82IKK42 pKa = 10.41KK43 pKa = 9.87AWQQAKK49 pKa = 10.64ADD51 pKa = 4.12LANMGSYY58 pKa = 7.64GTPKK62 pKa = 10.44AVLRR66 pKa = 11.84GADD69 pKa = 3.31RR70 pKa = 11.84IMSYY74 pKa = 10.63RR75 pKa = 11.84KK76 pKa = 9.97VYY78 pKa = 10.82SGDD81 pKa = 3.02IANFIIFDD89 pKa = 4.08EE90 pKa = 4.46VQHH93 pKa = 6.88AINN96 pKa = 3.99

Molecular weight: 11.17 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

47

0

47

13765

54

1273

292.9

32.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.679 ± 0.499

1.075 ± 0.164

6.284 ± 0.248

7.098 ± 0.287

3.908 ± 0.231

7.388 ± 0.263

1.983 ± 0.199

5.957 ± 0.223

6.923 ± 0.267

8.231 ± 0.229

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.146 ± 0.184

4.795 ± 0.262

3.226 ± 0.154

4.221 ± 0.281

5.231 ± 0.275

6.059 ± 0.316

5.311 ± 0.304

6.698 ± 0.27

1.366 ± 0.122

3.422 ± 0.22
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski