Pseudodesulfovibrio cashew

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Desulfovibrionales; Desulfovibrionaceae; Pseudodesulfovibrio

Average proteome isoelectric point is 6.18

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3498 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6I6JM85|A0A6I6JM85_9DELT DNA helicase OS=Pseudodesulfovibrio cashew OX=2678688 GN=GM415_15175 PE=4 SV=1
MM1 pKa = 7.63YY2 pKa = 7.91DD3 pKa = 3.36TLSFATSNNSPTSVTMSLSLEE24 pKa = 4.15GLLSNTSPDD33 pKa = 3.31GYY35 pKa = 9.91ATSDD39 pKa = 3.46TSISIYY45 pKa = 10.52DD46 pKa = 3.32ITGYY50 pKa = 10.48SSWLEE55 pKa = 3.61EE56 pKa = 4.0SAYY59 pKa = 10.23GLGMVTSFTKK69 pKa = 10.68VATAAINFAVGDD81 pKa = 4.08QYY83 pKa = 11.64WLDD86 pKa = 4.88LLNQWVSFDD95 pKa = 3.66DD96 pKa = 3.64MAYY99 pKa = 8.45DD100 pKa = 3.85TTGQTYY106 pKa = 10.76SFDD109 pKa = 3.61LTKK112 pKa = 10.91SLTFEE117 pKa = 4.73ADD119 pKa = 3.04PLKK122 pKa = 10.31TYY124 pKa = 10.07GIRR127 pKa = 11.84IWTSADD133 pKa = 3.13ANGSNEE139 pKa = 4.57GISASDD145 pKa = 3.9FYY147 pKa = 11.02NTSEE151 pKa = 4.67VGFTEE156 pKa = 4.84LNGATFEE163 pKa = 4.38SGSGAFLANQGSTAPVATPEE183 pKa = 4.14PSTILLLGAGLFGLVAVRR201 pKa = 11.84RR202 pKa = 11.84KK203 pKa = 9.63RR204 pKa = 11.84AAIQQ208 pKa = 3.14

Molecular weight: 22.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6I6JGK3|A0A6I6JGK3_9DELT Ppx-GppA domain-containing protein OS=Pseudodesulfovibrio cashew OX=2678688 GN=GM415_08410 PE=4 SV=1
MM1 pKa = 7.7PKK3 pKa = 9.95IKK5 pKa = 9.47TRR7 pKa = 11.84RR8 pKa = 11.84AAAKK12 pKa = 9.74RR13 pKa = 11.84FSKK16 pKa = 9.7TATGKK21 pKa = 10.1FKK23 pKa = 10.74RR24 pKa = 11.84RR25 pKa = 11.84RR26 pKa = 11.84KK27 pKa = 9.07NLRR30 pKa = 11.84HH31 pKa = 6.24ILTKK35 pKa = 10.67KK36 pKa = 7.68NAKK39 pKa = 9.22RR40 pKa = 11.84KK41 pKa = 9.18RR42 pKa = 11.84RR43 pKa = 11.84LGQSTTVDD51 pKa = 3.58GANMKK56 pKa = 10.1AVRR59 pKa = 11.84RR60 pKa = 11.84QLPNGG65 pKa = 3.51

Molecular weight: 7.53 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3498

0

3498

1141533

33

3767

326.3

35.96

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.641 ± 0.048

1.306 ± 0.017

5.801 ± 0.04

6.808 ± 0.044

4.096 ± 0.027

8.224 ± 0.04

2.001 ± 0.017

5.376 ± 0.034

4.815 ± 0.04

10.343 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.934 ± 0.019

3.081 ± 0.021

4.637 ± 0.029

2.927 ± 0.022

6.03 ± 0.046

5.508 ± 0.031

5.143 ± 0.038

7.41 ± 0.035

1.156 ± 0.015

2.764 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski