Paenibacillus larvae subsp. larvae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus; Paenibacillus larvae

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4640 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6C0QUR0|A0A6C0QUR0_9BACL Sorbose PTS system IIB-like component OS=Paenibacillus larvae subsp. larvae OX=147375 GN=ERICV_03384 PE=4 SV=1
MM1 pKa = 7.88PEE3 pKa = 4.73LDD5 pKa = 4.0RR6 pKa = 11.84FDD8 pKa = 5.77YY9 pKa = 11.22DD10 pKa = 3.53DD11 pKa = 4.31TDD13 pKa = 5.33PIVASCASCDD23 pKa = 3.55GEE25 pKa = 4.35IYY27 pKa = 10.71EE28 pKa = 4.68GDD30 pKa = 3.85SVVSTTEE37 pKa = 3.35GDD39 pKa = 3.56IVHH42 pKa = 6.53EE43 pKa = 4.26EE44 pKa = 4.11CFAAFARR51 pKa = 11.84EE52 pKa = 4.34TYY54 pKa = 10.21RR55 pKa = 11.84SVSGMIDD62 pKa = 2.89AKK64 pKa = 10.98GRR66 pKa = 11.84III68 pKa = 4.77

Molecular weight: 7.47 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2L1TUT2|A0A2L1TUT2_9BACL Ribosomal RNA small subunit methyltransferase I OS=Paenibacillus larvae subsp. larvae OX=147375 GN=rsmI PE=3 SV=1
MM1 pKa = 7.88RR2 pKa = 11.84PTFNPNNRR10 pKa = 11.84KK11 pKa = 9.34RR12 pKa = 11.84KK13 pKa = 8.34KK14 pKa = 9.1NHH16 pKa = 4.74GFRR19 pKa = 11.84ARR21 pKa = 11.84MSTKK25 pKa = 10.03NGRR28 pKa = 11.84KK29 pKa = 8.83VLSARR34 pKa = 11.84RR35 pKa = 11.84QKK37 pKa = 10.26GRR39 pKa = 11.84KK40 pKa = 8.56VLSAA44 pKa = 4.05

Molecular weight: 5.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4640

0

4640

1256144

29

5369

270.7

30.42

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.233 ± 0.041

0.899 ± 0.012

5.036 ± 0.028

7.191 ± 0.048

4.184 ± 0.034

7.103 ± 0.034

2.208 ± 0.022

7.178 ± 0.041

6.622 ± 0.042

9.877 ± 0.036

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.825 ± 0.019

3.958 ± 0.026

3.896 ± 0.023

3.947 ± 0.033

4.927 ± 0.037

6.057 ± 0.03

5.278 ± 0.024

6.907 ± 0.028

1.154 ± 0.015

3.52 ± 0.025
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski