Rhododendron williamsianum

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; Ericales; Ericaceae; Ericoideae; Rhodoreae; Rhododendron

Average proteome isoelectric point is 6.53

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 21355 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6A4KF71|A0A6A4KF71_9ERIC Germin-like protein (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_21356 PE=3 SV=1
MM1 pKa = 7.52FEE3 pKa = 3.63QYY5 pKa = 11.2YY6 pKa = 9.38YY7 pKa = 10.38FQAWQDD13 pKa = 3.76DD14 pKa = 4.02EE15 pKa = 6.38SIIPTKK21 pKa = 10.66PFDD24 pKa = 5.14DD25 pKa = 5.75DD26 pKa = 4.28DD27 pKa = 4.44HH28 pKa = 8.72LSYY31 pKa = 10.7FYY33 pKa = 10.73IKK35 pKa = 10.62VSAEE39 pKa = 3.4LDD41 pKa = 3.64AEE43 pKa = 4.47HH44 pKa = 6.51VTGFWVPFDD53 pKa = 3.82QLVDD57 pKa = 4.03DD58 pKa = 5.41DD59 pKa = 5.51FSTSRR64 pKa = 11.84PIVSAILSEE73 pKa = 4.3VCVPVDD79 pKa = 3.82AQPDD83 pKa = 3.98MVDD86 pKa = 4.13HH87 pKa = 6.88IVGCARR93 pKa = 11.84SMARR97 pKa = 11.84EE98 pKa = 4.09SCNVGSVVLPMFVHH112 pKa = 6.67IVSEE116 pKa = 4.82DD117 pKa = 3.72YY118 pKa = 11.07ILDD121 pKa = 4.15DD122 pKa = 5.22DD123 pKa = 5.07VRR125 pKa = 11.84DD126 pKa = 4.09DD127 pKa = 3.88VDD129 pKa = 5.07DD130 pKa = 4.33NFAVLEE136 pKa = 4.26SSNGGAGGSTGG147 pKa = 3.34

Molecular weight: 16.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6A4KY64|A0A6A4KY64_9ERIC Non-specific serine/threonine protein kinase (Fragment) OS=Rhododendron williamsianum OX=262921 GN=C3L33_17889 PE=4 SV=1
MM1 pKa = 7.63TSTCISNCINDD12 pKa = 2.9ARR14 pKa = 11.84APVRR18 pKa = 11.84ATYY21 pKa = 10.92VNLYY25 pKa = 9.28KK26 pKa = 10.28WPEE29 pKa = 3.66SDD31 pKa = 3.72AEE33 pKa = 4.15FVRR36 pKa = 11.84TVSSGGGGDD45 pKa = 3.4RR46 pKa = 11.84QPRR49 pKa = 11.84LHH51 pKa = 6.72PRR53 pKa = 11.84VVDD56 pKa = 4.57SISCRR61 pKa = 11.84QLYY64 pKa = 9.35LRR66 pKa = 11.84SYY68 pKa = 8.01TFSRR72 pKa = 11.84KK73 pKa = 6.68EE74 pKa = 3.96TVPEE78 pKa = 3.9RR79 pKa = 11.84TKK81 pKa = 10.91KK82 pKa = 9.95CLARR86 pKa = 11.84ARR88 pKa = 11.84EE89 pKa = 3.94RR90 pKa = 11.84VARR93 pKa = 11.84AGRR96 pKa = 11.84RR97 pKa = 11.84GKK99 pKa = 10.89GRR101 pKa = 11.84VHH103 pKa = 6.68GKK105 pKa = 9.71RR106 pKa = 11.84RR107 pKa = 11.84VAVAGRR113 pKa = 11.84RR114 pKa = 11.84AKK116 pKa = 10.5DD117 pKa = 3.17VWCAALCAIFHH128 pKa = 6.98RR129 pKa = 11.84LLTCTASVDD138 pKa = 3.99VVEE141 pKa = 6.31HH142 pKa = 6.71SDD144 pKa = 3.26QQ145 pKa = 3.66

Molecular weight: 16.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

21355

0

21355

8907007

24

5851

417.1

46.35

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.838 ± 0.014

1.882 ± 0.008

5.323 ± 0.012

6.562 ± 0.018

4.225 ± 0.01

6.883 ± 0.017

2.305 ± 0.007

5.075 ± 0.009

5.811 ± 0.014

9.816 ± 0.019

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.409 ± 0.006

4.22 ± 0.011

4.993 ± 0.016

3.506 ± 0.011

5.406 ± 0.012

8.885 ± 0.018

4.836 ± 0.01

6.845 ± 0.012

1.294 ± 0.006

2.755 ± 0.008
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski