Caulobacter phage Seuss

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Seussvirus; Caulobacter virus Seuss

Average proteome isoelectric point is 6.49

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 117 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0K1LM91|A0A0K1LM91_9CAUD Uncharacterized protein OS=Caulobacter phage Seuss OX=1675601 GN=CPT_Seuss116 PE=4 SV=1
MM1 pKa = 7.6LKK3 pKa = 10.6LKK5 pKa = 10.58LYY7 pKa = 10.7LVTNEE12 pKa = 5.04DD13 pKa = 3.06VDD15 pKa = 4.61GNNLDD20 pKa = 3.6AFVWAEE26 pKa = 3.95TLEE29 pKa = 4.17QAIQLYY35 pKa = 10.65LPVFDD40 pKa = 5.93QDD42 pKa = 4.05TLSDD46 pKa = 3.48AARR49 pKa = 11.84VFEE52 pKa = 4.81VPTTPPPEE60 pKa = 4.07ARR62 pKa = 11.84ALEE65 pKa = 4.43WYY67 pKa = 10.15DD68 pKa = 3.73GVIHH72 pKa = 7.05VYY74 pKa = 10.41GG75 pKa = 3.82

Molecular weight: 8.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0K1LMV3|A0A0K1LMV3_9CAUD Uncharacterized protein OS=Caulobacter phage Seuss OX=1675601 GN=CPT_Seuss7 PE=4 SV=1
MM1 pKa = 7.2SQLGYY6 pKa = 10.56KK7 pKa = 10.68DD8 pKa = 3.7MVFDD12 pKa = 3.54PHH14 pKa = 7.79AVVWLKK20 pKa = 9.9PLPKK24 pKa = 9.6IQPRR28 pKa = 11.84PMPRR32 pKa = 11.84HH33 pKa = 4.97ATALPDD39 pKa = 3.34HH40 pKa = 6.5SAGIEE45 pKa = 3.95FEE47 pKa = 4.88AFDD50 pKa = 3.66ARR52 pKa = 11.84AVHH55 pKa = 6.05RR56 pKa = 11.84VFWKK60 pKa = 10.21FRR62 pKa = 11.84APNEE66 pKa = 3.67ALAWRR71 pKa = 11.84EE72 pKa = 3.53VDD74 pKa = 4.41RR75 pKa = 11.84LCQRR79 pKa = 11.84AGYY82 pKa = 8.67NRR84 pKa = 11.84AWMGLRR90 pKa = 11.84RR91 pKa = 11.84AKK93 pKa = 10.16QEE95 pKa = 3.96PLVGRR100 pKa = 11.84DD101 pKa = 3.13VRR103 pKa = 11.84EE104 pKa = 3.9PNEE107 pKa = 3.66ALRR110 pKa = 11.84AHH112 pKa = 5.92VRR114 pKa = 11.84AALLGRR120 pKa = 11.84SGPGSAEE127 pKa = 3.5IGAA130 pKa = 4.33

Molecular weight: 14.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

117

0

117

26590

55

1822

227.3

25.18

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.241 ± 0.423

0.786 ± 0.094

6.07 ± 0.168

6.036 ± 0.252

3.768 ± 0.159

6.924 ± 0.185

1.989 ± 0.188

5.322 ± 0.15

4.81 ± 0.191

8.492 ± 0.214

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.689 ± 0.165

3.825 ± 0.188

4.84 ± 0.208

4.31 ± 0.274

6.318 ± 0.221

5.78 ± 0.251

6.657 ± 0.32

6.927 ± 0.247

1.527 ± 0.101

2.689 ± 0.165
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski