Pseudoclavibacter caeni

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Microbacteriaceae; Pseudoclavibacter

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1700 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A7C8BNH5|A0A7C8BNH5_9MICO Ribose-5-phosphate isomerase OS=Pseudoclavibacter caeni OX=908846 GN=F8O02_04380 PE=3 SV=1
MM1 pKa = 7.33SLYY4 pKa = 10.79AVTYY8 pKa = 10.13VYY10 pKa = 10.53IDD12 pKa = 4.31DD13 pKa = 4.81DD14 pKa = 4.1AALAATRR21 pKa = 11.84PEE23 pKa = 3.51HH24 pKa = 6.47RR25 pKa = 11.84AYY27 pKa = 11.02LSGLQQNGQNLASGPLAVPGPNSALLILQADD58 pKa = 4.51SIEE61 pKa = 4.16QAAALSDD68 pKa = 4.56DD69 pKa = 4.41DD70 pKa = 4.81PMVASGLVTEE80 pKa = 4.87RR81 pKa = 11.84HH82 pKa = 4.43IQAWNIVIGGLGDD95 pKa = 3.39

Molecular weight: 9.95 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A7C8FUT7|A0A7C8FUT7_9MICO Phosphomannomutase OS=Pseudoclavibacter caeni OX=908846 GN=F8O02_00145 PE=3 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.41KK15 pKa = 9.87KK16 pKa = 9.7HH17 pKa = 5.84RR18 pKa = 11.84KK19 pKa = 8.56LLRR22 pKa = 11.84KK23 pKa = 7.78TRR25 pKa = 11.84HH26 pKa = 3.65QRR28 pKa = 11.84RR29 pKa = 11.84NKK31 pKa = 9.78KK32 pKa = 9.85

Molecular weight: 4.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1700

0

1700

596281

32

2202

350.8

37.65

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.594 ± 0.085

0.563 ± 0.013

6.57 ± 0.043

5.488 ± 0.061

2.706 ± 0.031

8.921 ± 0.052

2.315 ± 0.024

4.197 ± 0.04

1.681 ± 0.041

10.157 ± 0.064

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.729 ± 0.022

1.673 ± 0.028

5.549 ± 0.045

3.082 ± 0.038

8.474 ± 0.072

4.976 ± 0.047

6.215 ± 0.049

8.907 ± 0.056

1.408 ± 0.028

1.795 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski