Pepper yellow leaf curl Aceh virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.96

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A455R4L9|A0A455R4L9_9GEMI Nuclear shuttle protein OS=Pepper yellow leaf curl Aceh virus OX=2547432 GN=BV1 PE=3 SV=1
MM1 pKa = 7.81PPPSKK6 pKa = 10.51FRR8 pKa = 11.84INAKK12 pKa = 10.07NFFITYY18 pKa = 6.67PQCSLSKK25 pKa = 11.0EE26 pKa = 4.09EE27 pKa = 5.67ALSQLQALEE36 pKa = 4.13TPTNKK41 pKa = 10.1KK42 pKa = 9.64YY43 pKa = 10.89IKK45 pKa = 9.66ICRR48 pKa = 11.84EE49 pKa = 3.74LHH51 pKa = 6.25EE52 pKa = 5.87DD53 pKa = 4.22GSPHH57 pKa = 6.11LHH59 pKa = 6.16VLIQFEE65 pKa = 5.54GKK67 pKa = 9.16FQCKK71 pKa = 8.84NPRR74 pKa = 11.84FFDD77 pKa = 3.65LVSPTRR83 pKa = 11.84STHH86 pKa = 4.78FHH88 pKa = 6.87PNIQGAKK95 pKa = 9.86SSTDD99 pKa = 2.93VKK101 pKa = 11.19AYY103 pKa = 9.49IDD105 pKa = 4.07KK106 pKa = 11.31DD107 pKa = 3.22GDD109 pKa = 4.04TIDD112 pKa = 3.51WGAFQIDD119 pKa = 3.46GRR121 pKa = 11.84SARR124 pKa = 11.84GGCQNANDD132 pKa = 4.04ACAEE136 pKa = 3.95ALNAGSKK143 pKa = 9.46EE144 pKa = 3.55AALRR148 pKa = 11.84IIRR151 pKa = 11.84EE152 pKa = 4.32KK153 pKa = 10.93LPKK156 pKa = 10.08DD157 pKa = 3.96YY158 pKa = 10.78IFHH161 pKa = 6.26FHH163 pKa = 6.66NLNSNLDD170 pKa = 4.05RR171 pKa = 11.84IFAPPLEE178 pKa = 4.42VFVCPFLSSSFDD190 pKa = 3.36RR191 pKa = 11.84VPEE194 pKa = 3.9EE195 pKa = 3.51LQAWVSEE202 pKa = 4.27NVGDD206 pKa = 4.01AAARR210 pKa = 11.84PWRR213 pKa = 11.84PKK215 pKa = 10.37SIVIEE220 pKa = 4.41GEE222 pKa = 3.95SRR224 pKa = 11.84TGKK227 pKa = 8.58TMWARR232 pKa = 11.84SLGLHH237 pKa = 6.59NYY239 pKa = 10.03LCGHH243 pKa = 7.38LDD245 pKa = 4.39LSPKK249 pKa = 10.12VYY251 pKa = 11.11NNDD254 pKa = 2.08AWYY257 pKa = 10.88NVIDD261 pKa = 5.2DD262 pKa = 4.41VDD264 pKa = 3.61PHH266 pKa = 5.85YY267 pKa = 11.0LKK269 pKa = 10.7HH270 pKa = 6.2FKK272 pKa = 10.7EE273 pKa = 4.4FMGAQRR279 pKa = 11.84NWQSNTKK286 pKa = 9.02YY287 pKa = 10.63GKK289 pKa = 9.49PIQIKK294 pKa = 10.42GGIPTIFLCNPGPTSSYY311 pKa = 11.06KK312 pKa = 10.58EE313 pKa = 3.96YY314 pKa = 10.96LDD316 pKa = 3.65EE317 pKa = 5.84DD318 pKa = 4.03KK319 pKa = 11.74NNALKK324 pKa = 10.55SWAVKK329 pKa = 9.99NATFVTINEE338 pKa = 4.22PLYY341 pKa = 11.04SSSTEE346 pKa = 3.83DD347 pKa = 3.08TAPNCEE353 pKa = 4.36EE354 pKa = 4.1EE355 pKa = 4.58NNPQEE360 pKa = 4.41TYY362 pKa = 11.14

Molecular weight: 41.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A455R8S4|A0A455R8S4_9GEMI Movement protein BC1 OS=Pepper yellow leaf curl Aceh virus OX=2547432 GN=BC1 PE=3 SV=1
MM1 pKa = 7.94PKK3 pKa = 10.24RR4 pKa = 11.84SIDD7 pKa = 3.85TVSSLPMSITRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNYY23 pKa = 9.63ASQYY27 pKa = 9.85SLPAAAPTAPGMSYY41 pKa = 10.55KK42 pKa = 10.11RR43 pKa = 11.84RR44 pKa = 11.84AWVNRR49 pKa = 11.84PMNRR53 pKa = 11.84KK54 pKa = 7.77PRR56 pKa = 11.84LYY58 pKa = 9.98RR59 pKa = 11.84GRR61 pKa = 11.84RR62 pKa = 11.84SSDD65 pKa = 3.22VPRR68 pKa = 11.84GCEE71 pKa = 4.29GPCKK75 pKa = 10.21VQSFEE80 pKa = 3.81QRR82 pKa = 11.84HH83 pKa = 6.48DD84 pKa = 3.2ITHH87 pKa = 6.24TGKK90 pKa = 9.98VLCVSDD96 pKa = 3.48VTRR99 pKa = 11.84GNGITHH105 pKa = 6.78RR106 pKa = 11.84VGKK109 pKa = 9.44RR110 pKa = 11.84FCVKK114 pKa = 9.73SVYY117 pKa = 10.25IIGKK121 pKa = 8.61VWMDD125 pKa = 3.44EE126 pKa = 4.13NIKK129 pKa = 10.76SKK131 pKa = 10.6NHH133 pKa = 5.55TNNVMFWLVRR143 pKa = 11.84DD144 pKa = 4.08RR145 pKa = 11.84RR146 pKa = 11.84PGTTPYY152 pKa = 11.31GFGEE156 pKa = 4.7LFNMYY161 pKa = 10.54DD162 pKa = 4.09NEE164 pKa = 4.4PSTATIKK171 pKa = 10.86NDD173 pKa = 2.9LRR175 pKa = 11.84DD176 pKa = 3.56RR177 pKa = 11.84VQVLHH182 pKa = 6.82RR183 pKa = 11.84FSATVTGGQYY193 pKa = 10.83ASKK196 pKa = 9.76EE197 pKa = 3.75QAIVKK202 pKa = 10.16RR203 pKa = 11.84FFRR206 pKa = 11.84VNNYY210 pKa = 7.88VVYY213 pKa = 10.46NHH215 pKa = 6.03QEE217 pKa = 3.42AAKK220 pKa = 10.4YY221 pKa = 9.25EE222 pKa = 4.13NHH224 pKa = 6.46TEE226 pKa = 3.99NALLLYY232 pKa = 7.29MACTHH237 pKa = 7.07ASNPVYY243 pKa = 9.86ATLKK247 pKa = 9.47IRR249 pKa = 11.84IYY251 pKa = 10.67FYY253 pKa = 11.5DD254 pKa = 3.33NVTNN258 pKa = 4.07

Molecular weight: 29.77 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1646

85

362

205.8

23.47

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.043 ± 0.595

2.369 ± 0.354

4.678 ± 0.589

4.678 ± 0.717

4.313 ± 0.427

5.407 ± 0.459

3.584 ± 0.466

5.346 ± 0.457

5.589 ± 0.509

6.926 ± 0.591

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.944 ± 0.379

6.197 ± 0.648

5.407 ± 0.517

4.253 ± 0.526

6.987 ± 1.152

8.991 ± 1.03

5.65 ± 0.654

7.169 ± 1.124

1.337 ± 0.221

4.131 ± 0.493
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski