Bartonella apis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Bartonellaceae; Bartonella

Average proteome isoelectric point is 6.72

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2111 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1R0F9A8|A0A1R0F9A8_9RHIZ ApeA_NTD1 domain-containing protein OS=Bartonella apis OX=1686310 GN=PEB0149_009730 PE=4 SV=1
MM1 pKa = 7.71LSPTSFDD8 pKa = 3.78EE9 pKa = 4.85INFLMQYY16 pKa = 10.45SFYY19 pKa = 10.99DD20 pKa = 2.89AWKK23 pKa = 10.83YY24 pKa = 10.62NIQEE28 pKa = 4.03LRR30 pKa = 11.84LYY32 pKa = 10.4DD33 pKa = 3.54QLLAIDD39 pKa = 4.42NVAPINLDD47 pKa = 2.93GDD49 pKa = 5.06FIRR52 pKa = 11.84MPLPIRR58 pKa = 11.84VLVFTFLSYY67 pKa = 11.38

Molecular weight: 8.0 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1R0FBQ4|A0A1R0FBQ4_9RHIZ Propionyl-CoA carboxylase beta chain OS=Bartonella apis OX=1686310 GN=PEB0149_018730 PE=4 SV=1
MM1 pKa = 7.01QVPLIRR7 pKa = 11.84NPLKK11 pKa = 9.88TPKK14 pKa = 9.51IVPFIFVRR22 pKa = 11.84KK23 pKa = 8.76KK24 pKa = 10.89CGVTTQGILAIGQYY38 pKa = 10.31RR39 pKa = 11.84FPCALGRR46 pKa = 11.84NGLTTRR52 pKa = 11.84KK53 pKa = 9.73RR54 pKa = 11.84EE55 pKa = 4.08GDD57 pKa = 3.61GATPIAVMPILGGFKK72 pKa = 10.6KK73 pKa = 10.72NNFPNLPHH81 pKa = 6.94HH82 pKa = 6.47LLKK85 pKa = 10.65LHH87 pKa = 6.32HH88 pKa = 6.66VKK90 pKa = 10.6PSDD93 pKa = 3.48GWCDD97 pKa = 3.58QSWDD101 pKa = 3.59TNYY104 pKa = 10.12NRR106 pKa = 11.84PVRR109 pKa = 11.84LPYY112 pKa = 10.36KK113 pKa = 10.49NSAEE117 pKa = 4.05RR118 pKa = 11.84LCRR121 pKa = 11.84RR122 pKa = 11.84DD123 pKa = 3.57DD124 pKa = 4.1LYY126 pKa = 11.38DD127 pKa = 3.29IVLIPDD133 pKa = 3.31WNIRR137 pKa = 11.84RR138 pKa = 11.84RR139 pKa = 11.84IQNCGSAIFFHH150 pKa = 6.96LARR153 pKa = 11.84PDD155 pKa = 3.81FSPTEE160 pKa = 3.76GCIAISRR167 pKa = 11.84RR168 pKa = 11.84TMEE171 pKa = 5.24RR172 pKa = 11.84ILPFISRR179 pKa = 11.84EE180 pKa = 4.0TKK182 pKa = 10.63LITLGSITRR191 pKa = 11.84SQPALVTRR199 pKa = 4.85

Molecular weight: 22.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2111

0

2111

691305

12

6082

327.5

36.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.402 ± 0.062

0.838 ± 0.019

5.794 ± 0.061

6.068 ± 0.051

4.307 ± 0.041

7.629 ± 0.07

2.142 ± 0.023

6.707 ± 0.048

5.888 ± 0.043

9.63 ± 0.077

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.523 ± 0.028

4.04 ± 0.052

4.39 ± 0.038

3.177 ± 0.028

5.418 ± 0.052

6.015 ± 0.038

5.313 ± 0.058

6.959 ± 0.045

1.105 ± 0.02

2.655 ± 0.029
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski