Capybara microvirus Cap1_SP_206

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.54

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5F1|A0A4P8W5F1_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_206 OX=2585409 PE=4 SV=1
MM1 pKa = 7.77SDD3 pKa = 3.7SKK5 pKa = 11.16FDD7 pKa = 3.82PSKK10 pKa = 11.17DD11 pKa = 3.4FEE13 pKa = 6.26LDD15 pKa = 3.28DD16 pKa = 4.8GSIVHH21 pKa = 6.34YY22 pKa = 10.46GDD24 pKa = 3.25PRR26 pKa = 11.84YY27 pKa = 10.38IFDD30 pKa = 4.39IGWNDD35 pKa = 3.31EE36 pKa = 4.26SKK38 pKa = 11.22KK39 pKa = 10.92DD40 pKa = 3.56FLIIKK45 pKa = 8.34GAQPFNEE52 pKa = 4.2VMDD55 pKa = 3.74KK56 pKa = 10.84RR57 pKa = 11.84AIGTTLYY64 pKa = 10.83EE65 pKa = 4.58LIDD68 pKa = 4.0RR69 pKa = 11.84YY70 pKa = 11.06GGVDD74 pKa = 3.14EE75 pKa = 5.32CSAAFSEE82 pKa = 4.49GGVYY86 pKa = 10.54ADD88 pKa = 3.52VVGTPEE94 pKa = 3.83FGNNEE99 pKa = 3.78SYY101 pKa = 11.21AAVLHH106 pKa = 5.24QLKK109 pKa = 10.53DD110 pKa = 3.48QLSKK114 pKa = 11.39LEE116 pKa = 4.07EE117 pKa = 4.04ANKK120 pKa = 10.19QIEE123 pKa = 4.37KK124 pKa = 7.85TTEE127 pKa = 3.77KK128 pKa = 10.99KK129 pKa = 10.6EE130 pKa = 3.87IEE132 pKa = 4.14

Molecular weight: 14.85 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4V1FVR0|A0A4V1FVR0_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_206 OX=2585409 PE=4 SV=1
MM1 pKa = 7.86CLRR4 pKa = 11.84PLHH7 pKa = 5.99YY8 pKa = 10.06FQSDD12 pKa = 2.76IMNEE16 pKa = 4.3STGKK20 pKa = 10.63YY21 pKa = 8.28YY22 pKa = 11.21GFVTGYY28 pKa = 7.49QTLVADD34 pKa = 4.07YY35 pKa = 11.16NDD37 pKa = 3.42FKK39 pKa = 11.43LRR41 pKa = 11.84DD42 pKa = 3.75IPCTLAHH49 pKa = 7.12RR50 pKa = 11.84ATPIKK55 pKa = 9.77VACGRR60 pKa = 11.84CCEE63 pKa = 4.27CLNAKK68 pKa = 9.61KK69 pKa = 10.07MSWVGRR75 pKa = 11.84AVAEE79 pKa = 4.46LEE81 pKa = 4.21TSKK84 pKa = 11.15YY85 pKa = 10.95GYY87 pKa = 10.02FLSITYY93 pKa = 10.75NNDD96 pKa = 2.55HH97 pKa = 6.57VLPKK101 pKa = 9.92PEE103 pKa = 3.97KK104 pKa = 10.51RR105 pKa = 11.84EE106 pKa = 3.49IQLFIKK112 pKa = 10.48RR113 pKa = 11.84LRR115 pKa = 11.84KK116 pKa = 9.38HH117 pKa = 5.85FKK119 pKa = 10.25LRR121 pKa = 11.84YY122 pKa = 7.31LTVGEE127 pKa = 4.85LGSLTDD133 pKa = 3.42RR134 pKa = 11.84AHH136 pKa = 5.85YY137 pKa = 10.78HH138 pKa = 6.02MILYY142 pKa = 10.39SNQPINDD149 pKa = 3.55LVYY152 pKa = 10.45YY153 pKa = 10.18SSSGSNILYY162 pKa = 9.56TSEE165 pKa = 6.02LIDD168 pKa = 3.75SCWQKK173 pKa = 11.3GSIKK177 pKa = 9.94IGRR180 pKa = 11.84AEE182 pKa = 4.16ASSIAYY188 pKa = 6.41TVGYY192 pKa = 9.7IVSKK196 pKa = 10.28EE197 pKa = 3.75KK198 pKa = 9.66KK199 pKa = 8.19TCFKK203 pKa = 10.72LQSQGLGFDD212 pKa = 3.45YY213 pKa = 10.64FKK215 pKa = 11.11NLNSSYY221 pKa = 11.04VLSTGRR227 pKa = 11.84GKK229 pKa = 10.27EE230 pKa = 3.85LYY232 pKa = 10.19VRR234 pKa = 11.84LPRR237 pKa = 11.84YY238 pKa = 9.69LKK240 pKa = 10.28EE241 pKa = 3.99KK242 pKa = 10.62YY243 pKa = 9.78GLKK246 pKa = 10.24SEE248 pKa = 4.21FDD250 pKa = 3.49SVKK253 pKa = 10.86AEE255 pKa = 4.0RR256 pKa = 11.84EE257 pKa = 4.07WKK259 pKa = 10.57NKK261 pKa = 9.21VFGSGLDD268 pKa = 3.48EE269 pKa = 4.07EE270 pKa = 5.4DD271 pKa = 3.54YY272 pKa = 11.45RR273 pKa = 11.84DD274 pKa = 3.72FKK276 pKa = 11.34QYY278 pKa = 11.04LSEE281 pKa = 4.37HH282 pKa = 6.37KK283 pKa = 10.67LIVHH287 pKa = 7.16

Molecular weight: 33.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1422

83

576

203.1

22.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.767 ± 1.328

1.266 ± 0.454

6.188 ± 0.848

6.61 ± 1.08

4.852 ± 0.408

7.032 ± 0.672

1.758 ± 0.42

5.626 ± 0.558

6.681 ± 1.357

8.931 ± 0.978

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.039 ± 0.501

5.345 ± 0.668

3.586 ± 0.981

2.813 ± 0.197

4.36 ± 0.439

9.986 ± 1.701

5.556 ± 0.722

4.993 ± 0.613

1.055 ± 0.228

5.556 ± 0.751
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski