Trinickia soli

Taxonomy: cellular organisms; Bacteria;

Average proteome isoelectric point is 6.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5348 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2N7VPZ8|A0A2N7VPZ8_9BURK Gamma carbonic anhydrase family protein OS=Trinickia soli OX=380675 GN=C0Z19_21635 PE=4 SV=1
MM1 pKa = 6.97NTYY4 pKa = 9.6CACPYY9 pKa = 10.75NLDD12 pKa = 3.48AVGFCFGTFDD22 pKa = 5.01EE23 pKa = 4.53YY24 pKa = 11.22LQRR27 pKa = 11.84AAACADD33 pKa = 3.3SFGNVVEE40 pKa = 4.17EE41 pKa = 5.08FEE43 pKa = 4.21IQFIDD48 pKa = 4.24GDD50 pKa = 3.92AADD53 pKa = 4.42AQLFAAFGVDD63 pKa = 4.01QAGLSAWFDD72 pKa = 3.4RR73 pKa = 11.84VEE75 pKa = 4.13DD76 pKa = 3.75LRR78 pKa = 11.84SEE80 pKa = 4.26VKK82 pKa = 10.43AAAFYY87 pKa = 10.43LASRR91 pKa = 11.84CGQTVGDD98 pKa = 5.0AIDD101 pKa = 3.61NAEE104 pKa = 4.15DD105 pKa = 3.44VIIRR109 pKa = 11.84KK110 pKa = 9.94GEE112 pKa = 3.91LADD115 pKa = 3.82AAAEE119 pKa = 4.07QFDD122 pKa = 5.0DD123 pKa = 5.23FYY125 pKa = 11.68SDD127 pKa = 3.7LPRR130 pKa = 11.84GVRR133 pKa = 11.84MYY135 pKa = 11.56VDD137 pKa = 3.51IEE139 pKa = 4.18AYY141 pKa = 10.33ARR143 pKa = 11.84DD144 pKa = 3.86CRR146 pKa = 11.84LSGDD150 pKa = 3.42LDD152 pKa = 3.55EE153 pKa = 6.62FEE155 pKa = 5.57FAGQAYY161 pKa = 7.32TVLNANEE168 pKa = 4.25CC169 pKa = 3.77

Molecular weight: 18.59 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2N7W774|A0A2N7W774_9BURK Uncharacterized protein OS=Trinickia soli OX=380675 GN=C0Z19_09760 PE=4 SV=1
MM1 pKa = 7.64HH2 pKa = 7.19KK3 pKa = 10.33RR4 pKa = 11.84LASRR8 pKa = 11.84HH9 pKa = 4.63NRR11 pKa = 11.84MTLSPARR18 pKa = 11.84PVRR21 pKa = 11.84RR22 pKa = 11.84ASMRR26 pKa = 11.84ALRR29 pKa = 11.84HH30 pKa = 4.64HH31 pKa = 7.33AARR34 pKa = 11.84TRR36 pKa = 11.84ALDD39 pKa = 3.53TRR41 pKa = 11.84RR42 pKa = 11.84SATNGSHH49 pKa = 6.85DD50 pKa = 3.67RR51 pKa = 11.84SGGLLRR57 pKa = 11.84AWLRR61 pKa = 11.84AVLSALRR68 pKa = 11.84TGTRR72 pKa = 11.84ARR74 pKa = 11.84RR75 pKa = 11.84VQLRR79 pKa = 11.84RR80 pKa = 11.84LLRR83 pKa = 11.84RR84 pKa = 11.84ATIRR88 pKa = 11.84RR89 pKa = 11.84STLARR94 pKa = 11.84AKK96 pKa = 10.4RR97 pKa = 11.84SAQANGNRR105 pKa = 11.84LPRR108 pKa = 11.84RR109 pKa = 11.84LSASTGWFTFGSRR122 pKa = 3.53

Molecular weight: 13.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5348

0

5348

1751137

21

3222

327.4

35.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.109 ± 0.051

0.963 ± 0.01

5.433 ± 0.024

5.234 ± 0.033

3.617 ± 0.02

8.136 ± 0.037

2.342 ± 0.017

4.588 ± 0.02

2.958 ± 0.026

10.096 ± 0.042

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.299 ± 0.014

2.654 ± 0.024

5.124 ± 0.029

3.605 ± 0.022

7.264 ± 0.042

5.712 ± 0.026

5.422 ± 0.034

7.663 ± 0.028

1.352 ± 0.013

2.431 ± 0.019
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski