Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Chloroflexi; Dehalococcoidia; Dehalogenimonas; Dehalogenimonas lykanthroporepellens

Average proteome isoelectric point is 6.34

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1619 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D8K447|D8K447_DEHLB Amidophosphoribosyltransferase OS=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) OX=552811 GN=purF PE=3 SV=1
MM1 pKa = 7.49KK2 pKa = 10.32KK3 pKa = 9.73HH4 pKa = 5.91LRR6 pKa = 11.84KK7 pKa = 10.22LMMVGFVMVLAMSALVVGCDD27 pKa = 3.31STTDD31 pKa = 3.68EE32 pKa = 5.01PDD34 pKa = 3.08PTQSVNQKK42 pKa = 8.82PGQGVTMSPAKK53 pKa = 8.82PTWSTGWFQTEE64 pKa = 4.06VFIKK68 pKa = 10.5ALEE71 pKa = 3.87EE72 pKa = 3.62LGYY75 pKa = 10.72NVEE78 pKa = 5.0DD79 pKa = 6.08AIALDD84 pKa = 4.05NPIFYY89 pKa = 10.85NSVANGDD96 pKa = 3.27VDD98 pKa = 4.59FWADD102 pKa = 2.8GWFPLHH108 pKa = 6.1NQYY111 pKa = 11.24LPIIEE116 pKa = 4.59GKK118 pKa = 10.55AEE120 pKa = 4.19VVGEE124 pKa = 3.95FAMGGALQGYY134 pKa = 9.55LIDD137 pKa = 3.99KK138 pKa = 8.32ATAVEE143 pKa = 4.09YY144 pKa = 10.49GITSIEE150 pKa = 4.18DD151 pKa = 3.46FKK153 pKa = 11.56DD154 pKa = 3.36PEE156 pKa = 3.8IAALFDD162 pKa = 3.62TDD164 pKa = 4.6GDD166 pKa = 3.96GKK168 pKa = 10.96ANMVACPPGWGCEE181 pKa = 4.01TVINHH186 pKa = 6.0HH187 pKa = 5.89MEE189 pKa = 4.38AYY191 pKa = 9.83EE192 pKa = 4.06LADD195 pKa = 3.46WVNADD200 pKa = 3.28QAGYY204 pKa = 9.82DD205 pKa = 3.36VAMADD210 pKa = 3.33VVARR214 pKa = 11.84YY215 pKa = 8.59NAGEE219 pKa = 3.95PVFFYY224 pKa = 9.96TWTPNWTVNALVPGEE239 pKa = 4.07DD240 pKa = 4.01VVWLEE245 pKa = 4.49VPFSSLPADD254 pKa = 3.58QADD257 pKa = 4.21LEE259 pKa = 4.91DD260 pKa = 3.72EE261 pKa = 4.48TFVANLVGKK270 pKa = 10.3AGDD273 pKa = 3.82SEE275 pKa = 4.83PYY277 pKa = 10.48NMGWPANDD285 pKa = 3.04IQVVANSAFLDD296 pKa = 3.94ANPAAAYY303 pKa = 10.12LFEE306 pKa = 5.58NIQIPLEE313 pKa = 4.81DD314 pKa = 3.65IFEE317 pKa = 4.43QNYY320 pKa = 9.63QMYY323 pKa = 9.96QGEE326 pKa = 4.85DD327 pKa = 3.24RR328 pKa = 11.84PEE330 pKa = 5.9DD331 pKa = 3.38IVAHH335 pKa = 5.81AEE337 pKa = 3.41AWIAANQSTFDD348 pKa = 3.25AWIEE352 pKa = 4.05GAIDD356 pKa = 3.55AADD359 pKa = 3.07

Molecular weight: 39.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D8K001|D8K001_DEHLB Lysine--tRNA ligase OS=Dehalogenimonas lykanthroporepellens (strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) OX=552811 GN=lysS PE=3 SV=1
MM1 pKa = 7.42NLTLEE6 pKa = 4.24YY7 pKa = 10.32LLSVFIAALAVIQLGAVRR25 pKa = 11.84AGLRR29 pKa = 11.84GLYY32 pKa = 10.21LGGSRR37 pKa = 11.84LVACLVAVPCLLISGILFFTWNDD60 pKa = 3.39RR61 pKa = 11.84NPTGVIEE68 pKa = 4.6GAQQAGLFSLAVAAAAAFTVILGLITNRR96 pKa = 11.84RR97 pKa = 11.84MPADD101 pKa = 3.93RR102 pKa = 11.84PTSTEE107 pKa = 3.58GLEE110 pKa = 3.96ALKK113 pKa = 9.73RR114 pKa = 11.84TTFIHH119 pKa = 7.54AIRR122 pKa = 11.84SRR124 pKa = 11.84FWKK127 pKa = 10.5SS128 pKa = 2.65

Molecular weight: 13.75 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1619

0

1619

477317

31

1597

294.8

32.45

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.652 ± 0.083

1.103 ± 0.027

5.545 ± 0.046

6.754 ± 0.063

3.695 ± 0.043

8.105 ± 0.065

1.911 ± 0.024

6.405 ± 0.057

4.419 ± 0.057

9.948 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.407 ± 0.031

3.328 ± 0.039

4.611 ± 0.034

3.145 ± 0.033

6.528 ± 0.066

5.684 ± 0.043

5.559 ± 0.049

7.339 ± 0.054

1.102 ± 0.026

2.76 ± 0.032
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski