Capybara microvirus Cap1_SP_55

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.89

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4N1|A0A4P8W4N1_9VIRU Uncharacterized protein OS=Capybara microvirus Cap1_SP_55 OX=2584783 PE=4 SV=1
MM1 pKa = 7.1FRR3 pKa = 11.84CRR5 pKa = 11.84QPIRR9 pKa = 11.84FSPSSSISLIEE20 pKa = 3.98PSLVDD25 pKa = 3.8DD26 pKa = 4.6VYY28 pKa = 11.09VCKK31 pKa = 10.51EE32 pKa = 3.23IDD34 pKa = 3.19QCRR37 pKa = 11.84SLPSSDD43 pKa = 4.54NMDD46 pKa = 4.07LKK48 pKa = 10.4TLLDD52 pKa = 4.1AGLPIDD58 pKa = 4.2EE59 pKa = 4.69VSTIIRR65 pKa = 11.84SGSVDD70 pKa = 3.58LSEE73 pKa = 4.27LAKK76 pKa = 10.62KK77 pKa = 10.72YY78 pKa = 10.58GVEE81 pKa = 3.89IKK83 pKa = 10.84NKK85 pKa = 9.61EE86 pKa = 3.89NEE88 pKa = 3.94

Molecular weight: 9.84 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7G1|A0A4P8W7G1_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_55 OX=2584783 PE=4 SV=1
MM1 pKa = 7.41NLNNFRR7 pKa = 11.84VKK9 pKa = 10.39SISPCSPKK17 pKa = 10.38KK18 pKa = 10.86VFVSNPRR25 pKa = 11.84SYY27 pKa = 11.62SSIKK31 pKa = 10.4AKK33 pKa = 10.29SDD35 pKa = 2.87SWSFRR40 pKa = 11.84LAAEE44 pKa = 4.58LKK46 pKa = 9.46NAVEE50 pKa = 4.21NGYY53 pKa = 10.31KK54 pKa = 10.28VGFVTLTYY62 pKa = 11.03NDD64 pKa = 4.4DD65 pKa = 3.61NLPYY69 pKa = 10.57VDD71 pKa = 5.09GSLLRR76 pKa = 11.84DD77 pKa = 3.44VTLDD81 pKa = 3.45SRR83 pKa = 11.84PCFDD87 pKa = 3.78RR88 pKa = 11.84KK89 pKa = 7.9QVRR92 pKa = 11.84LFVDD96 pKa = 5.23NIRR99 pKa = 11.84KK100 pKa = 8.41WLWRR104 pKa = 11.84HH105 pKa = 4.9WRR107 pKa = 11.84ITDD110 pKa = 3.31IKK112 pKa = 9.5YY113 pKa = 7.84TVCSEE118 pKa = 3.88YY119 pKa = 11.39GEE121 pKa = 4.37FTRR124 pKa = 11.84RR125 pKa = 11.84PHH127 pKa = 4.76YY128 pKa = 10.14HH129 pKa = 7.04AVFAWPFKK137 pKa = 10.53AASFYY142 pKa = 10.76IGNDD146 pKa = 3.21EE147 pKa = 4.1NKK149 pKa = 10.31KK150 pKa = 10.52LVTRR154 pKa = 11.84PPFSAAMFHH163 pKa = 7.03ALIKK167 pKa = 10.51RR168 pKa = 11.84FWHH171 pKa = 6.07YY172 pKa = 11.43GFISPRR178 pKa = 11.84DD179 pKa = 3.52YY180 pKa = 11.26RR181 pKa = 11.84GGKK184 pKa = 7.38SCKK187 pKa = 9.65GRR189 pKa = 11.84VYY191 pKa = 10.78EE192 pKa = 4.25PFEE195 pKa = 4.18VDD197 pKa = 3.03PLKK200 pKa = 11.2VVGAACYY207 pKa = 9.58CGKK210 pKa = 10.35YY211 pKa = 9.0CCKK214 pKa = 10.6DD215 pKa = 2.73IAFYY219 pKa = 11.16EE220 pKa = 4.4DD221 pKa = 4.68LPTDD225 pKa = 3.67YY226 pKa = 10.35FVQSDD231 pKa = 3.82DD232 pKa = 3.71VDD234 pKa = 3.68VKK236 pKa = 11.03KK237 pKa = 10.68AIKK240 pKa = 10.3NCMPFHH246 pKa = 6.44LHH248 pKa = 6.2SKK250 pKa = 10.45SLGLCFLDD258 pKa = 5.72KK259 pKa = 10.1ITNEE263 pKa = 3.79DD264 pKa = 3.32KK265 pKa = 11.28LRR267 pKa = 11.84FLSKK271 pKa = 9.64GVQRR275 pKa = 11.84IGSDD279 pKa = 3.01KK280 pKa = 10.52FVSLPIYY287 pKa = 9.68YY288 pKa = 10.04KK289 pKa = 11.0NKK291 pKa = 9.79ILFDD295 pKa = 3.7TYY297 pKa = 11.65YY298 pKa = 11.2SFDD301 pKa = 4.04SNGDD305 pKa = 3.25RR306 pKa = 11.84LVRR309 pKa = 11.84RR310 pKa = 11.84KK311 pKa = 10.01ANKK314 pKa = 9.49FFLDD318 pKa = 3.62NYY320 pKa = 10.37FEE322 pKa = 4.65IYY324 pKa = 9.89HH325 pKa = 6.6IKK327 pKa = 8.75FQAYY331 pKa = 8.95KK332 pKa = 10.64SVFAPLFDD340 pKa = 5.35DD341 pKa = 5.56SYY343 pKa = 11.06LKK345 pKa = 10.94NYY347 pKa = 9.53IDD349 pKa = 5.65DD350 pKa = 4.38VYY352 pKa = 11.52LSDD355 pKa = 3.88LKK357 pKa = 10.87EE358 pKa = 3.85RR359 pKa = 11.84RR360 pKa = 11.84FNLGVGDD367 pKa = 4.35LNSFTMMYY375 pKa = 10.41LSYY378 pKa = 11.43AFVDD382 pKa = 3.95PNFICNDD389 pKa = 3.97EE390 pKa = 4.45IITWLMRR397 pKa = 11.84YY398 pKa = 9.25VPFYY402 pKa = 11.14EE403 pKa = 3.88NYY405 pKa = 8.94KK406 pKa = 10.53FKK408 pKa = 10.85GIKK411 pKa = 9.98FGVSFEE417 pKa = 4.03MKK419 pKa = 9.94TYY421 pKa = 10.52FNNLNRR427 pKa = 11.84LFYY430 pKa = 10.28DD431 pKa = 3.48HH432 pKa = 7.12LVIFCNDD439 pKa = 3.76SISDD443 pKa = 3.71TRR445 pKa = 11.84LDD447 pKa = 4.91DD448 pKa = 3.47YY449 pKa = 11.71RR450 pKa = 11.84KK451 pKa = 6.82TQKK454 pKa = 10.62VKK456 pKa = 10.98DD457 pKa = 4.44FYY459 pKa = 11.58NQQ461 pKa = 2.84

Molecular weight: 54.63 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1820

88

751

364.0

41.24

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.495 ± 1.265

1.429 ± 0.473

7.253 ± 0.655

4.56 ± 0.846

5.824 ± 1.048

5.824 ± 0.875

1.923 ± 0.143

4.945 ± 0.43

6.374 ± 0.892

9.396 ± 0.737

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.143 ± 0.374

5.879 ± 0.359

4.341 ± 0.617

3.077 ± 0.875

4.615 ± 0.549

9.286 ± 0.662

4.67 ± 0.694

6.923 ± 0.474

1.264 ± 0.345

4.78 ± 0.956
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski