Treponema bryantii

Taxonomy: cellular organisms; Bacteria; Spirochaetes; Spirochaetia; Spirochaetales; Treponemataceae; Treponema

Average proteome isoelectric point is 6.1

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3051 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9AZM4|A0A1H9AZM4_9SPIO Uncharacterized protein OS=Treponema bryantii OX=163 GN=SAMN04487977_101527 PE=4 SV=1
MM1 pKa = 7.79SNMYY5 pKa = 10.61YY6 pKa = 10.31YY7 pKa = 10.42GTVTLYY13 pKa = 10.47TDD15 pKa = 3.78EE16 pKa = 5.85GDD18 pKa = 3.04IDD20 pKa = 3.91VDD22 pKa = 3.77VRR24 pKa = 11.84AEE26 pKa = 3.83ATGWYY31 pKa = 9.96SSGDD35 pKa = 3.03SWGYY39 pKa = 10.22GCEE42 pKa = 4.11PPDD45 pKa = 3.73GDD47 pKa = 3.79FTIDD51 pKa = 2.93EE52 pKa = 4.34VEE54 pKa = 4.16YY55 pKa = 10.97VKK57 pKa = 10.8AYY59 pKa = 10.64DD60 pKa = 5.06DD61 pKa = 3.86YY62 pKa = 11.99SKK64 pKa = 11.41DD65 pKa = 3.39PVEE68 pKa = 4.72ITDD71 pKa = 3.5EE72 pKa = 4.04MKK74 pKa = 10.63KK75 pKa = 9.15QVRR78 pKa = 11.84EE79 pKa = 3.72KK80 pKa = 10.93LYY82 pKa = 10.05DD83 pKa = 3.52VEE85 pKa = 4.76FKK87 pKa = 10.71EE88 pKa = 5.9HH89 pKa = 6.35EE90 pKa = 4.39FEE92 pKa = 5.07PDD94 pKa = 2.72

Molecular weight: 10.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9CJB4|A0A1H9CJB4_9SPIO 50S ribosomal protein L23 OS=Treponema bryantii OX=163 GN=rplW PE=3 SV=1
MM1 pKa = 7.64AKK3 pKa = 10.13KK4 pKa = 10.52SLLIKK9 pKa = 10.27AARR12 pKa = 11.84KK13 pKa = 8.43PKK15 pKa = 10.76YY16 pKa = 7.22EE17 pKa = 3.61TRR19 pKa = 11.84QYY21 pKa = 11.19NRR23 pKa = 11.84CQICGRR29 pKa = 11.84PRR31 pKa = 11.84GYY33 pKa = 10.38LRR35 pKa = 11.84KK36 pKa = 9.85FKK38 pKa = 9.83MCRR41 pKa = 11.84ICFRR45 pKa = 11.84KK46 pKa = 9.56LASEE50 pKa = 4.25GQLPGVTKK58 pKa = 10.74SSWW61 pKa = 2.87

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3051

0

3051

1068725

29

4742

350.3

39.33

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.19 ± 0.052

1.424 ± 0.018

5.777 ± 0.039

7.037 ± 0.045

4.851 ± 0.041

6.544 ± 0.046

1.536 ± 0.019

7.772 ± 0.05

7.497 ± 0.036

8.715 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.449 ± 0.026

5.283 ± 0.045

3.438 ± 0.026

2.974 ± 0.023

3.722 ± 0.033

6.609 ± 0.047

5.7 ± 0.065

6.311 ± 0.036

1.052 ± 0.017

4.119 ± 0.037
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski