Capybara microvirus Cap1_SP_147

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W4E6|A0A4P8W4E6_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_147 OX=2585391 PE=4 SV=1
MM1 pKa = 7.59KK2 pKa = 10.63YY3 pKa = 9.96EE4 pKa = 4.08VYY6 pKa = 10.39AVKK9 pKa = 10.71DD10 pKa = 3.76SITGFNQPACEE21 pKa = 4.06LNQAAALRR29 pKa = 11.84SFKK32 pKa = 11.02NLINLNEE39 pKa = 4.07AFRR42 pKa = 11.84INAGDD47 pKa = 3.53YY48 pKa = 10.97SLFKK52 pKa = 10.65IADD55 pKa = 3.56FDD57 pKa = 4.3TDD59 pKa = 2.93TGYY62 pKa = 8.66CTGIDD67 pKa = 3.35PVFIVSGSSVLEE79 pKa = 4.1VNNAA83 pKa = 3.15

Molecular weight: 9.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7Z9|A0A4P8W7Z9_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_147 OX=2585391 PE=3 SV=1
MM1 pKa = 7.73CKK3 pKa = 10.08HH4 pKa = 6.35PLKK7 pKa = 10.53AFQYY11 pKa = 9.95GLHH14 pKa = 6.33EE15 pKa = 4.78KK16 pKa = 10.16SGKK19 pKa = 8.64PNYY22 pKa = 9.77IIAPYY27 pKa = 7.32QCKK30 pKa = 10.66YY31 pKa = 10.29IDD33 pKa = 3.79VDD35 pKa = 3.36IHH37 pKa = 6.73DD38 pKa = 5.2VPHH41 pKa = 6.64KK42 pKa = 10.09MYY44 pKa = 10.54NEE46 pKa = 4.05PVRR49 pKa = 11.84SQLTKK54 pKa = 10.82SIITSFLEE62 pKa = 4.32IPCGKK67 pKa = 10.18CIEE70 pKa = 4.44CRR72 pKa = 11.84LTYY75 pKa = 10.36ARR77 pKa = 11.84QWANRR82 pKa = 11.84CQVEE86 pKa = 3.66ADD88 pKa = 3.53QYY90 pKa = 11.37EE91 pKa = 4.56KK92 pKa = 11.36NCFITLTYY100 pKa = 10.4SDD102 pKa = 5.44DD103 pKa = 4.14YY104 pKa = 11.68IHH106 pKa = 7.04FNTFTDD112 pKa = 4.0PVTGEE117 pKa = 4.19LKK119 pKa = 10.61KK120 pKa = 11.11SPTLVKK126 pKa = 10.24RR127 pKa = 11.84DD128 pKa = 3.16IQNFMKK134 pKa = 10.71RR135 pKa = 11.84LRR137 pKa = 11.84KK138 pKa = 9.81KK139 pKa = 8.52YY140 pKa = 9.3GAGIRR145 pKa = 11.84FFACGEE151 pKa = 4.14YY152 pKa = 11.08GEE154 pKa = 4.73TTHH157 pKa = 6.99RR158 pKa = 11.84PHH160 pKa = 6.02YY161 pKa = 10.39HH162 pKa = 7.1LILFNHH168 pKa = 7.03DD169 pKa = 3.71FNDD172 pKa = 3.33KK173 pKa = 10.78KK174 pKa = 10.81LFKK177 pKa = 10.45VSRR180 pKa = 11.84GNPYY184 pKa = 10.26YY185 pKa = 10.18ISDD188 pKa = 4.26EE189 pKa = 5.06LSDD192 pKa = 3.64LWPFGFSMIGDD203 pKa = 3.97VSWQSCNYY211 pKa = 7.18VARR214 pKa = 11.84YY215 pKa = 6.75ITKK218 pKa = 9.87KK219 pKa = 10.12QYY221 pKa = 10.32KK222 pKa = 9.23KK223 pKa = 10.73KK224 pKa = 10.56NEE226 pKa = 3.96EE227 pKa = 3.95KK228 pKa = 10.78DD229 pKa = 3.84CIIYY233 pKa = 10.37NYY235 pKa = 9.9EE236 pKa = 3.9PEE238 pKa = 4.15FVLMSRR244 pKa = 11.84KK245 pKa = 9.53PGIGLKK251 pKa = 10.43YY252 pKa = 10.97YY253 pKa = 10.36EE254 pKa = 5.27DD255 pKa = 3.62NKK257 pKa = 10.73QDD259 pKa = 4.59FIRR262 pKa = 11.84FNGVYY267 pKa = 9.53LQNGRR272 pKa = 11.84LFTPPRR278 pKa = 11.84YY279 pKa = 9.29FNKK282 pKa = 10.3KK283 pKa = 10.18LEE285 pKa = 3.98IDD287 pKa = 3.86FGSEE291 pKa = 3.74YY292 pKa = 10.88LEE294 pKa = 3.98KK295 pKa = 10.64KK296 pKa = 9.53EE297 pKa = 3.9RR298 pKa = 11.84NKK300 pKa = 10.89KK301 pKa = 9.42IFNDD305 pKa = 3.38QSILKK310 pKa = 10.61DD311 pKa = 3.44EE312 pKa = 4.43LTDD315 pKa = 3.96LNYY318 pKa = 10.74LEE320 pKa = 4.57RR321 pKa = 11.84LQVEE325 pKa = 4.11EE326 pKa = 6.02DD327 pKa = 3.17ILLKK331 pKa = 9.27KK332 pKa = 9.24TKK334 pKa = 9.69ILHH337 pKa = 6.51RR338 pKa = 11.84NGADD342 pKa = 3.38PLGVLL347 pKa = 4.63

Molecular weight: 41.22 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1419

83

567

283.8

31.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.906 ± 2.701

1.268 ± 0.57

5.708 ± 0.82

5.426 ± 0.625

5.004 ± 0.686

6.413 ± 0.672

2.044 ± 0.346

5.567 ± 0.545

5.99 ± 1.47

7.752 ± 0.361

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.396 ± 0.358

7.541 ± 0.94

5.004 ± 1.156

3.946 ± 0.338

3.453 ± 0.724

7.893 ± 1.672

6.131 ± 0.691

4.933 ± 0.86

1.198 ± 0.446

5.426 ± 0.733
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski