Codonopsis vein clearing virus

Taxonomy: Viruses; Riboviria; Pararnavirae; Artverviricota; Revtraviricetes; Ortervirales; Caulimoviridae; Badnavirus

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A411AUG2|A0A411AUG2_9VIRU ORF2 OS=Codonopsis vein clearing virus OX=2510980 PE=4 SV=1
MM1 pKa = 7.66RR2 pKa = 11.84AALEE6 pKa = 4.09CKK8 pKa = 9.57EE9 pKa = 4.18FEE11 pKa = 4.37EE12 pKa = 5.23EE13 pKa = 4.14VEE15 pKa = 3.84KK16 pKa = 11.02WEE18 pKa = 4.14IPEE21 pKa = 4.21SSTLAGFKK29 pKa = 10.32EE30 pKa = 4.2LEE32 pKa = 4.02QYY34 pKa = 10.67PNLRR38 pKa = 11.84KK39 pKa = 9.82NVVYY43 pKa = 7.33PTCKK47 pKa = 10.09LPCFHH52 pKa = 7.25FSALADD58 pKa = 4.06PDD60 pKa = 3.38AHH62 pKa = 6.06ATFTKK67 pKa = 10.59RR68 pKa = 11.84EE69 pKa = 3.97DD70 pKa = 3.27RR71 pKa = 11.84VPFVVNTLFDD81 pKa = 3.88LAIIHH86 pKa = 5.69QVNLSYY92 pKa = 10.87IHH94 pKa = 6.7TRR96 pKa = 11.84LQLLSRR102 pKa = 11.84YY103 pKa = 7.23QARR106 pKa = 11.84KK107 pKa = 5.8TTGAPPLATIPEE119 pKa = 4.36DD120 pKa = 3.82RR121 pKa = 11.84PLPDD125 pKa = 4.19LSPVVEE131 pKa = 4.38AVTDD135 pKa = 3.82SVTGLKK141 pKa = 10.02SQIVSLKK148 pKa = 10.45ADD150 pKa = 3.39LRR152 pKa = 11.84EE153 pKa = 4.06IKK155 pKa = 10.48AGQTSIKK162 pKa = 10.2LALSDD167 pKa = 3.54LRR169 pKa = 11.84EE170 pKa = 4.18VVTALTEE177 pKa = 4.09RR178 pKa = 11.84EE179 pKa = 4.43LDD181 pKa = 3.78PKK183 pKa = 10.57PIEE186 pKa = 4.51ADD188 pKa = 3.34TAKK191 pKa = 10.54VAEE194 pKa = 4.02QLKK197 pKa = 10.33VSVKK201 pKa = 10.2EE202 pKa = 3.99IQASLKK208 pKa = 10.3DD209 pKa = 3.77LKK211 pKa = 11.13DD212 pKa = 3.55FAKK215 pKa = 10.77SLVPEE220 pKa = 4.34AA221 pKa = 4.62

Molecular weight: 24.69 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A411AUG2|A0A411AUG2_9VIRU ORF2 OS=Codonopsis vein clearing virus OX=2510980 PE=4 SV=1
MM1 pKa = 7.69SSWQLAASTDD11 pKa = 3.81EE12 pKa = 3.84YY13 pKa = 11.28RR14 pKa = 11.84KK15 pKa = 10.31ALNATGSLTKK25 pKa = 10.46DD26 pKa = 3.15NRR28 pKa = 11.84PVGFVEE34 pKa = 3.84PHH36 pKa = 6.49LFQPNLGDD44 pKa = 4.12TNIQRR49 pKa = 11.84QNNTLIHH56 pKa = 6.6LLIQTLEE63 pKa = 4.07EE64 pKa = 4.2VKK66 pKa = 10.68ALRR69 pKa = 11.84DD70 pKa = 3.3QVQILRR76 pKa = 11.84DD77 pKa = 3.74QVDD80 pKa = 3.69SLSKK84 pKa = 10.73GKK86 pKa = 10.44APEE89 pKa = 3.91VQLPKK94 pKa = 10.93DD95 pKa = 3.95VVDD98 pKa = 4.92KK99 pKa = 11.16LAAQLTTTHH108 pKa = 5.54VTPKK112 pKa = 10.63GKK114 pKa = 9.94FRR116 pKa = 11.84GKK118 pKa = 10.33GKK120 pKa = 10.19EE121 pKa = 3.79GQFRR125 pKa = 11.84VWSS128 pKa = 3.83

Molecular weight: 14.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3

0

3

2404

128

2055

801.3

90.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.947 ± 1.06

1.581 ± 0.394

5.075 ± 0.467

8.403 ± 0.778

3.245 ± 0.131

5.865 ± 1.465

2.163 ± 0.121

5.74 ± 0.864

7.488 ± 0.408

8.444 ± 1.805

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.121 ± 0.781

3.785 ± 0.678

5.699 ± 0.379

4.201 ± 0.928

5.408 ± 0.154

6.614 ± 0.312

6.406 ± 0.392

6.073 ± 0.982

1.331 ± 0.308

3.411 ± 0.982
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski