Corynebacterium sp. 13CS0277

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; unclassified Corynebacterium

Average proteome isoelectric point is 6.04

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2382 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2S9Z2I3|A0A2S9Z2I3_9CORY Uncharacterized protein OS=Corynebacterium sp. 13CS0277 OX=2071994 GN=C1Y63_05065 PE=4 SV=1
MM1 pKa = 7.56SEE3 pKa = 3.6ATADD7 pKa = 3.4IDD9 pKa = 4.3GVDD12 pKa = 4.46YY13 pKa = 10.78PFDD16 pKa = 3.72WPEE19 pKa = 4.0DD20 pKa = 3.9TTLLAAMLDD29 pKa = 3.63AGIPAPHH36 pKa = 6.81SCTLGQCGACRR47 pKa = 11.84CTVEE51 pKa = 5.1GPEE54 pKa = 3.64STMRR58 pKa = 11.84INQVLDD64 pKa = 3.9DD65 pKa = 4.13FDD67 pKa = 4.16VRR69 pKa = 11.84AGDD72 pKa = 3.74RR73 pKa = 11.84LACQTVRR80 pKa = 11.84VPGDD84 pKa = 3.35TTPAEE89 pKa = 3.59ISYY92 pKa = 9.65PFF94 pKa = 4.2

Molecular weight: 10.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2S9Z187|A0A2S9Z187_9CORY DUF3566 domain-containing protein OS=Corynebacterium sp. 13CS0277 OX=2071994 GN=C1Y63_08250 PE=4 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84VHH19 pKa = 6.02GFRR22 pKa = 11.84ARR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVAARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.71GRR42 pKa = 11.84ASLTAA47 pKa = 4.1

Molecular weight: 5.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2382

0

2382

817481

24

4452

343.2

36.78

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.606 ± 0.088

0.855 ± 0.017

6.011 ± 0.044

5.677 ± 0.055

3.048 ± 0.03

8.551 ± 0.061

2.338 ± 0.028

4.333 ± 0.038

2.6 ± 0.045

9.481 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.142 ± 0.022

2.283 ± 0.036

5.695 ± 0.049

3.274 ± 0.029

6.459 ± 0.054

5.078 ± 0.033

6.555 ± 0.055

8.487 ± 0.051

1.405 ± 0.023

2.122 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski