Paenibacillus contaminans

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Paenibacillaceae; Paenibacillus

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8159 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A329MV39|A0A329MV39_9BACL FAA hydrolase family protein OS=Paenibacillus contaminans OX=450362 GN=DQG23_07095 PE=4 SV=1
MM1 pKa = 7.23GVSVYY6 pKa = 7.11YY7 pKa = 10.38TCMRR11 pKa = 11.84NNNLTDD17 pKa = 3.66SEE19 pKa = 4.37EE20 pKa = 4.27QEE22 pKa = 3.58ITAIIDD28 pKa = 3.26KK29 pKa = 10.3YY30 pKa = 10.94NAGFEE35 pKa = 4.17MKK37 pKa = 10.46DD38 pKa = 2.96IGEE41 pKa = 4.43TFCVYY46 pKa = 10.44DD47 pKa = 3.89YY48 pKa = 11.48DD49 pKa = 4.02QDD51 pKa = 3.7EE52 pKa = 4.5PTVIFAGSTKK62 pKa = 10.65LPISDD67 pKa = 4.81DD68 pKa = 4.43FEE70 pKa = 4.73DD71 pKa = 3.62TLQALFYY78 pKa = 10.29WLACLTDD85 pKa = 3.19IRR87 pKa = 11.84RR88 pKa = 11.84SISNGDD94 pKa = 3.19WHH96 pKa = 6.73VHH98 pKa = 6.35LDD100 pKa = 3.66DD101 pKa = 5.15TDD103 pKa = 5.44AIWDD107 pKa = 4.33EE108 pKa = 4.19EE109 pKa = 4.78TGWQMPEE116 pKa = 3.92DD117 pKa = 3.74

Molecular weight: 13.55 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A329MJT7|A0A329MJT7_9BACL Ca(2+)/H(+) antiporter OS=Paenibacillus contaminans OX=450362 GN=cax PE=3 SV=1
MM1 pKa = 7.73PVPAPPPRR9 pKa = 11.84RR10 pKa = 11.84LPPPAAPALAPPLLPRR26 pKa = 11.84RR27 pKa = 11.84FPRR30 pKa = 11.84SPPALAPSS38 pKa = 3.62

Molecular weight: 3.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8159

0

8159

2897758

16

4862

355.2

39.53

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.619 ± 0.032

0.776 ± 0.008

5.252 ± 0.018

6.553 ± 0.029

4.311 ± 0.017

7.58 ± 0.028

1.984 ± 0.013

6.381 ± 0.024

5.336 ± 0.026

9.768 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.764 ± 0.012

3.908 ± 0.02

4.199 ± 0.018

3.622 ± 0.015

5.157 ± 0.027

6.336 ± 0.021

5.433 ± 0.03

6.99 ± 0.023

1.384 ± 0.009

3.644 ± 0.016
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski