Gordonia phage Yvonnetastic

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Yvonnevirus; Gordonia virus Yvonnetastic

Average proteome isoelectric point is 5.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 198 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A142K9G1|A0A142K9G1_9CAUD Uncharacterized protein OS=Gordonia phage Yvonnetastic OX=1821566 GN=200 PE=4 SV=1
MM1 pKa = 7.81SNTTCDD7 pKa = 3.71HH8 pKa = 6.89DD9 pKa = 3.83WQLVEE14 pKa = 4.64SGYY17 pKa = 10.31SRR19 pKa = 11.84YY20 pKa = 9.54WSVSIDD26 pKa = 3.66DD27 pKa = 5.39DD28 pKa = 4.28GTIHH32 pKa = 7.46AGEE35 pKa = 4.69DD36 pKa = 2.94WMTDD40 pKa = 3.11DD41 pKa = 4.26GDD43 pKa = 4.14GVRR46 pKa = 11.84LVCLNCQTTRR56 pKa = 11.84KK57 pKa = 10.06DD58 pKa = 3.53DD59 pKa = 5.61LNIQWFF65 pKa = 3.61

Molecular weight: 7.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A142K976|A0A142K976_9CAUD Uncharacterized protein OS=Gordonia phage Yvonnetastic OX=1821566 GN=115 PE=4 SV=1
MM1 pKa = 7.94IVMSEE6 pKa = 4.56HH7 pKa = 5.57NQDD10 pKa = 2.81WLPRR14 pKa = 11.84FHH16 pKa = 7.27SGYY19 pKa = 10.05RR20 pKa = 11.84IEE22 pKa = 5.06PSGCHH27 pKa = 4.7VWQKK31 pKa = 9.25ATNNRR36 pKa = 11.84GYY38 pKa = 11.37GVMYY42 pKa = 10.78LNGKK46 pKa = 8.33LQLAHH51 pKa = 6.73RR52 pKa = 11.84VAFFSRR58 pKa = 11.84HH59 pKa = 4.39GRR61 pKa = 11.84WPQRR65 pKa = 11.84GLVIDD70 pKa = 4.48HH71 pKa = 6.74LCEE74 pKa = 4.19NKK76 pKa = 10.07PCVNPDD82 pKa = 3.21HH83 pKa = 6.8LRR85 pKa = 11.84EE86 pKa = 4.01IEE88 pKa = 3.51NWRR91 pKa = 11.84NVRR94 pKa = 11.84RR95 pKa = 11.84PRR97 pKa = 11.84EE98 pKa = 3.98VGSTDD103 pKa = 3.05QEE105 pKa = 3.89RR106 pKa = 11.84RR107 pKa = 11.84RR108 pKa = 11.84EE109 pKa = 3.8QWRR112 pKa = 11.84IRR114 pKa = 11.84QARR117 pKa = 11.84CRR119 pKa = 11.84GSYY122 pKa = 10.31SSTYY126 pKa = 7.5EE127 pKa = 3.71AKK129 pKa = 10.48RR130 pKa = 3.41

Molecular weight: 15.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

198

0

198

31266

25

2765

157.9

17.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.504 ± 0.449

1.452 ± 0.177

6.848 ± 0.19

7.168 ± 0.237

2.869 ± 0.108

8.006 ± 0.252

2.444 ± 0.164

4.977 ± 0.142

4.602 ± 0.186

7.753 ± 0.158

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.498 ± 0.092

3.429 ± 0.107

4.897 ± 0.171

3.716 ± 0.185

6.774 ± 0.18

5.795 ± 0.162

5.575 ± 0.221

6.736 ± 0.192

2.476 ± 0.113

3.483 ± 0.202
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski