Common chimpanzee papillomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 10

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|O37390|O37390_9PAPI Minor capsid protein L2 OS=Common chimpanzee papillomavirus 1 OX=66261 GN=L2 PE=3 SV=1
MM1 pKa = 7.59EE2 pKa = 4.85LQVVPVDD9 pKa = 3.63VTTTTTNASLLPLLIALTVCLISIILLVFVSEE41 pKa = 4.12FVIYY45 pKa = 10.64SSVLVLTLLIYY56 pKa = 10.95LLLWLLLTTHH66 pKa = 6.57LQFYY70 pKa = 10.77LLTLSLCFIPAFSVHH85 pKa = 6.23QYY87 pKa = 10.58ILQTQQLL94 pKa = 3.8

Molecular weight: 10.62 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|O37389|O37389_9PAPI E5 OS=Common chimpanzee papillomavirus 1 OX=66261 GN=E5 PE=4 SV=1
MM1 pKa = 7.4VKK3 pKa = 9.91HH4 pKa = 6.53CNGKK8 pKa = 9.69YY9 pKa = 10.26VLTAQLYY16 pKa = 9.25VLLHH20 pKa = 6.71LYY22 pKa = 10.35LVLCKK27 pKa = 9.96KK28 pKa = 10.8YY29 pKa = 10.58PMLGLLHH36 pKa = 6.67TPPPLHH42 pKa = 7.09RR43 pKa = 11.84PPTQCRR49 pKa = 11.84PVFQKK54 pKa = 10.59NVCKK58 pKa = 10.35RR59 pKa = 11.84RR60 pKa = 11.84LLNDD64 pKa = 3.22NEE66 pKa = 4.52DD67 pKa = 3.5LHH69 pKa = 7.74NLQEE73 pKa = 4.54KK74 pKa = 10.0PNTPATLCVTQTVQPLTVQTTTSTITVTAVTTDD107 pKa = 3.21GTTVTVLVHH116 pKa = 6.3LL117 pKa = 4.7

Molecular weight: 13.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1801

94

501

257.3

28.69

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.83 ± 0.537

3.109 ± 0.902

4.22 ± 0.626

4.553 ± 0.619

4.164 ± 0.603

5.053 ± 0.802

2.943 ± 0.437

5.108 ± 1.063

4.997 ± 1.058

9.162 ± 1.648

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.721 ± 0.395

4.386 ± 0.59

6.552 ± 1.113

4.997 ± 0.734

3.776 ± 0.591

8.051 ± 1.208

8.773 ± 0.701

7.662 ± 0.493

1.166 ± 0.313

3.776 ± 0.623
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski