Tuwongella immobilis

Taxonomy: cellular organisms; Bacteria; PVC group; Planctomycetes; Planctomycetia; Gemmatales; Gemmataceae; Tuwongella

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5223 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6C2YUW9|A0A6C2YUW9_9BACT Chromosome partition protein Smc OS=Tuwongella immobilis OX=692036 GN=smc PE=3 SV=1
MM1 pKa = 7.55ASDD4 pKa = 4.15VIGPTVVGVVDD15 pKa = 4.08VDD17 pKa = 3.54NHH19 pKa = 6.18PLPIRR24 pKa = 11.84CLGEE28 pKa = 3.61NSFLVDD34 pKa = 3.23PVVAVLWLHH43 pKa = 5.82QPQPGCGLAVGCVEE57 pKa = 4.07AVEE60 pKa = 4.54MPLAVALDD68 pKa = 3.84GGGGDD73 pKa = 3.97GSQIALAEE81 pKa = 4.04FAVDD85 pKa = 3.49LFQAFRR91 pKa = 11.84GVV93 pKa = 3.0

Molecular weight: 9.51 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6C2YVK1|A0A6C2YVK1_9BACT RCK N-terminal domain-containing protein OS=Tuwongella immobilis OX=692036 GN=GMBLW1_41840 PE=4 SV=1
MM1 pKa = 7.6AKK3 pKa = 10.1KK4 pKa = 10.49NKK6 pKa = 7.96TNRR9 pKa = 11.84SLKK12 pKa = 9.81KK13 pKa = 9.89RR14 pKa = 11.84FRR16 pKa = 11.84ITATGKK22 pKa = 9.88IKK24 pKa = 10.38HH25 pKa = 5.14GHH27 pKa = 4.15VNRR30 pKa = 11.84RR31 pKa = 11.84HH32 pKa = 5.54LLAGRR37 pKa = 11.84TSKK40 pKa = 10.65RR41 pKa = 11.84KK42 pKa = 9.25RR43 pKa = 11.84QLGQPAVRR51 pKa = 11.84NDD53 pKa = 2.85IVAKK57 pKa = 10.39KK58 pKa = 9.84IVLAMGGAA66 pKa = 3.63

Molecular weight: 7.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5223

0

5223

1989792

29

10565

381.0

41.86

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.894 ± 0.04

0.956 ± 0.015

5.449 ± 0.026

5.624 ± 0.045

3.592 ± 0.018

7.884 ± 0.073

2.03 ± 0.023

5.195 ± 0.026

3.37 ± 0.044

10.317 ± 0.052

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.291 ± 0.024

3.179 ± 0.036

6.364 ± 0.039

4.197 ± 0.031

7.083 ± 0.05

6.064 ± 0.04

5.864 ± 0.06

6.813 ± 0.038

1.637 ± 0.02

2.197 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski