Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24)

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Trueperales; Trueperaceae; Truepera; Truepera radiovictrix

Average proteome isoelectric point is 6.71

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2924 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D7CQH3|D7CQH3_TRURR Oxidoreductase domain protein OS=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) OX=649638 GN=Trad_1841 PE=4 SV=1
MM1 pKa = 7.36KK2 pKa = 9.08RR3 pKa = 11.84TLATATLLAGTLLGAASAQDD23 pKa = 3.74APSGAITVTAWDD35 pKa = 3.46IAAEE39 pKa = 4.0ALEE42 pKa = 3.99ALVPGFNEE50 pKa = 3.92QYY52 pKa = 10.33PDD54 pKa = 3.49VQVTVEE60 pKa = 4.04NLGNQQVFDD69 pKa = 4.52RR70 pKa = 11.84GLAGCAAGGADD81 pKa = 4.55LPDD84 pKa = 3.63VYY86 pKa = 11.15AVEE89 pKa = 4.21NNEE92 pKa = 5.75AEE94 pKa = 4.59VFWNRR99 pKa = 11.84FPDD102 pKa = 3.85CFLDD106 pKa = 4.08LTALGADD113 pKa = 4.21EE114 pKa = 5.64LRR116 pKa = 11.84DD117 pKa = 3.98DD118 pKa = 4.93FPDD121 pKa = 4.55FKK123 pKa = 10.04WTEE126 pKa = 3.91LTVGEE131 pKa = 4.33RR132 pKa = 11.84VYY134 pKa = 10.89AIPWDD139 pKa = 3.78SGPVVTFYY147 pKa = 10.99RR148 pKa = 11.84RR149 pKa = 11.84DD150 pKa = 3.39LYY152 pKa = 11.14EE153 pKa = 3.95EE154 pKa = 4.86AGINPDD160 pKa = 5.29EE161 pKa = 4.93IEE163 pKa = 3.96TWDD166 pKa = 3.89DD167 pKa = 4.0FIEE170 pKa = 4.71AGQALDD176 pKa = 3.59EE177 pKa = 4.32ATGAKK182 pKa = 9.09MLWFDD187 pKa = 4.85FSDD190 pKa = 3.88DD191 pKa = 4.04GVWRR195 pKa = 11.84QLANQNGCFYY205 pKa = 10.57FDD207 pKa = 3.82PEE209 pKa = 4.38GTEE212 pKa = 3.87VTVNQPGCVDD222 pKa = 2.97AMEE225 pKa = 4.43TMKK228 pKa = 10.97ALYY231 pKa = 10.03DD232 pKa = 3.69AGIVAIVDD240 pKa = 3.31WNGAIQEE247 pKa = 4.23IRR249 pKa = 11.84NGTLAGAVFGAWYY262 pKa = 10.47VGTIQSNAPDD272 pKa = 3.51QEE274 pKa = 4.84GNWGVYY280 pKa = 8.3EE281 pKa = 4.39MPASEE286 pKa = 4.31PGGVRR291 pKa = 11.84AANLGGSALAIPASSQNPEE310 pKa = 3.26AAMAFIRR317 pKa = 11.84YY318 pKa = 8.76ALATTEE324 pKa = 4.55GQVSMLRR331 pKa = 11.84NQGLVPSYY339 pKa = 10.89LPALEE344 pKa = 4.7DD345 pKa = 4.18PYY347 pKa = 11.12VQEE350 pKa = 4.49PVPYY354 pKa = 10.01WGDD357 pKa = 3.33QPIWQDD363 pKa = 2.79ILATLGEE370 pKa = 4.31IPQARR375 pKa = 11.84GTQYY379 pKa = 10.35FQEE382 pKa = 4.11ARR384 pKa = 11.84QIVTNTLSQYY394 pKa = 8.32LTQNAYY400 pKa = 10.13EE401 pKa = 4.42DD402 pKa = 3.88AQAAMDD408 pKa = 4.99DD409 pKa = 3.68AAQQISAAVGLPIAGQQ425 pKa = 3.22

Molecular weight: 45.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D7CTU7|D7CTU7_TRURR Uncharacterized protein OS=Truepera radiovictrix (strain DSM 17093 / CIP 108686 / LMG 22925 / RQ-24) OX=649638 GN=Trad_2538 PE=4 SV=1
MM1 pKa = 7.56KK2 pKa = 10.5LNRR5 pKa = 11.84FLRR8 pKa = 11.84TALKK12 pKa = 10.76LFVLTRR18 pKa = 11.84GFRR21 pKa = 11.84AARR24 pKa = 11.84RR25 pKa = 11.84GVGRR29 pKa = 11.84YY30 pKa = 8.31GGRR33 pKa = 11.84RR34 pKa = 11.84VRR36 pKa = 11.84GGVVQQLMRR45 pKa = 11.84RR46 pKa = 11.84LLRR49 pKa = 4.36

Molecular weight: 5.76 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2924

0

2924

943825

35

3080

322.8

34.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.344 ± 0.062

0.652 ± 0.012

4.592 ± 0.039

6.623 ± 0.043

3.696 ± 0.028

8.829 ± 0.041

2.02 ± 0.024

3.182 ± 0.041

2.151 ± 0.035

12.421 ± 0.08

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.609 ± 0.018

2.027 ± 0.024

5.859 ± 0.035

2.904 ± 0.022

8.02 ± 0.047

4.678 ± 0.028

5.402 ± 0.031

8.107 ± 0.039

1.355 ± 0.018

2.528 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski