Deinococcus koreensis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3967 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2K3UYP5|A0A2K3UYP5_9DEIO Restriction endonuclease subunit R OS=Deinococcus koreensis OX=2054903 GN=CVO96_09995 PE=4 SV=1
MM1 pKa = 6.91NTTPRR6 pKa = 11.84VLALMAALAAGTAAAATTNTTAGQIITNQATATFTDD42 pKa = 4.15PTTLAAATPIVSNTVQTVVLPKK64 pKa = 10.18PGFDD68 pKa = 2.85IQYY71 pKa = 10.81ADD73 pKa = 3.72GSADD77 pKa = 3.38NTTATAPAPSFDD89 pKa = 3.64KK90 pKa = 11.04TGVLPGTTVTTGYY103 pKa = 10.84VVVNTGNVNGYY114 pKa = 8.52VVNLAADD121 pKa = 3.84STGGNAPQDD130 pKa = 3.41VKK132 pKa = 11.58YY133 pKa = 11.1YY134 pKa = 11.08LDD136 pKa = 4.05ANNDD140 pKa = 3.72GVPDD144 pKa = 3.49SSTPVTSVTLNADD157 pKa = 3.86NPNTPADD164 pKa = 3.75EE165 pKa = 5.11GIVRR169 pKa = 11.84ILQVITVASTAGTGAQYY186 pKa = 10.78SASPAGTAPSGSVSATDD203 pKa = 3.29TSTGITTAYY212 pKa = 9.22PYY214 pKa = 11.04AALTEE219 pKa = 4.36AQANPASTNGDD230 pKa = 3.41LQYY233 pKa = 11.15TRR235 pKa = 11.84VTVFTPTVTNAPADD249 pKa = 4.15GDD251 pKa = 4.07PATAGQQTPTTTVVVPPSASTVIDD275 pKa = 3.89PNNPTSAPGTPSSPSDD291 pKa = 3.42PTQPGYY297 pKa = 9.62TDD299 pKa = 3.81PPVAGSTGAVAVTVVGNVQTAYY321 pKa = 10.12PPADD325 pKa = 3.39TNAAADD331 pKa = 3.56AVNFKK336 pKa = 9.38NTVTTPAGSPADD348 pKa = 3.94TVNLFPVNPALNVGDD363 pKa = 4.23AGYY366 pKa = 9.83GAPYY370 pKa = 8.48GTNNGDD376 pKa = 3.84GSFTLPDD383 pKa = 3.4GTVVRR388 pKa = 11.84FLNADD393 pKa = 3.56GSAPTLVTSPVDD405 pKa = 3.38GKK407 pKa = 10.73AYY409 pKa = 9.64PVVSVPAGGATVSYY423 pKa = 8.55ITQVVYY429 pKa = 10.45PDD431 pKa = 4.22SNSLTNPTPITVVVGADD448 pKa = 3.05SGNDD452 pKa = 3.25YY453 pKa = 11.48NLIADD458 pKa = 4.39GTTTDD463 pKa = 3.78KK464 pKa = 11.16VLPPALQFGDD474 pKa = 3.93SNGVQTPPTADD485 pKa = 3.51ASAQPSEE492 pKa = 4.42TVTPGAAVSTGTPTPGMTTDD512 pKa = 3.45SSAVFPMDD520 pKa = 2.76IANPGEE526 pKa = 4.16YY527 pKa = 10.27GDD529 pKa = 4.62TYY531 pKa = 10.21TLSGSVLVPLSNGTTATVPVKK552 pKa = 10.78YY553 pKa = 10.28VDD555 pKa = 3.31ASGTEE560 pKa = 4.09LPKK563 pKa = 10.81NAAGQYY569 pKa = 6.33ITPVVDD575 pKa = 4.63ANAEE579 pKa = 4.0YY580 pKa = 10.12RR581 pKa = 11.84VYY583 pKa = 11.0AVVDD587 pKa = 3.49IPSNARR593 pKa = 11.84LTLPGSPLSVQQTVTSNYY611 pKa = 10.8SNITLQDD618 pKa = 3.46TNDD621 pKa = 4.83LIRR624 pKa = 11.84VGAIGGITVDD634 pKa = 3.48KK635 pKa = 9.49YY636 pKa = 10.47QAVGAAPSQTAAGKK650 pKa = 8.12TIKK653 pKa = 9.4TALPGEE659 pKa = 4.48TINYY663 pKa = 9.52AIVARR668 pKa = 11.84NSYY671 pKa = 10.7NDD673 pKa = 3.29AVKK676 pKa = 10.87NFVLSDD682 pKa = 3.37VSGGSTNVYY691 pKa = 10.86AFTTFQGAGVVLSGFGAYY709 pKa = 9.31PSAQALYY716 pKa = 9.44RR717 pKa = 11.84LNGGASFSASVPAAGSVTSGLEE739 pKa = 3.78VAVDD743 pKa = 3.88SNGDD747 pKa = 3.63GVFNSADD754 pKa = 3.63VFPSGASITLNISAQVKK771 pKa = 9.56

Molecular weight: 76.94 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2K3V247|A0A2K3V247_9DEIO Sodium:proton antiporter OS=Deinococcus koreensis OX=2054903 GN=CVO96_03895 PE=4 SV=1
MM1 pKa = 7.13GRR3 pKa = 11.84SRR5 pKa = 11.84RR6 pKa = 11.84QDD8 pKa = 2.96EE9 pKa = 4.51TTVLGSSEE17 pKa = 4.3VGTDD21 pKa = 3.61LLALRR26 pKa = 11.84AQLHH30 pKa = 5.41RR31 pKa = 11.84AEE33 pKa = 4.52KK34 pKa = 8.38ATRR37 pKa = 11.84RR38 pKa = 11.84APTPPPVRR46 pKa = 11.84PQRR49 pKa = 11.84PQPVKK54 pKa = 9.28PQRR57 pKa = 11.84EE58 pKa = 4.16AEE60 pKa = 4.14LAGVLTDD67 pKa = 3.44EE68 pKa = 4.95FSLHH72 pKa = 6.29RR73 pKa = 11.84AHH75 pKa = 7.05ARR77 pKa = 11.84LRR79 pKa = 11.84AAVYY83 pKa = 10.22DD84 pKa = 4.2GAYY87 pKa = 9.68HH88 pKa = 6.99LCPHH92 pKa = 7.46AIGHH96 pKa = 6.1ARR98 pKa = 11.84AEE100 pKa = 4.37GFLEE104 pKa = 4.06HH105 pKa = 7.81DD106 pKa = 3.87ILNVLLSGRR115 pKa = 11.84VRR117 pKa = 11.84AVYY120 pKa = 10.17PDD122 pKa = 3.25DD123 pKa = 5.17HH124 pKa = 6.78RR125 pKa = 11.84WLVCGQFEE133 pKa = 4.62ACGVSLPLHH142 pKa = 5.72VVVQHH147 pKa = 5.85FRR149 pKa = 11.84SGVGGGHH156 pKa = 6.63IDD158 pKa = 2.91IVTAFVPRR166 pKa = 11.84HH167 pKa = 4.62PHH169 pKa = 5.26HH170 pKa = 6.7VISRR174 pKa = 11.84ARR176 pKa = 11.84LAVMLRR182 pKa = 11.84YY183 pKa = 9.93DD184 pKa = 3.82DD185 pKa = 3.92EE186 pKa = 4.66QIRR189 pKa = 11.84THH191 pKa = 6.06TAAPTPKK198 pKa = 9.83AGHH201 pKa = 6.81RR202 pKa = 11.84SRR204 pKa = 11.84GRR206 pKa = 11.84WKK208 pKa = 10.52KK209 pKa = 10.77SSS211 pKa = 3.16

Molecular weight: 23.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3967

0

3967

1274002

29

3267

321.1

34.51

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.684 ± 0.053

0.566 ± 0.011

5.012 ± 0.034

5.317 ± 0.037

3.103 ± 0.024

9.508 ± 0.047

2.098 ± 0.024

3.398 ± 0.029

2.191 ± 0.03

11.87 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.832 ± 0.019

2.238 ± 0.024

6.027 ± 0.036

3.817 ± 0.025

7.553 ± 0.037

5.343 ± 0.031

5.941 ± 0.04

7.836 ± 0.029

1.395 ± 0.016

2.271 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski