Salmonella phage vB_SenS_AG11

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Siphoviridae; Guernseyvirinae; Jerseyvirus; Salmonella virus AG11

Average proteome isoelectric point is 6.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 66 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S4SGH6|S4SGH6_9CAUD Uncharacterized protein OS=Salmonella phage vB_SenS_AG11 OX=1211279 GN=AG11_56 PE=4 SV=1
MM1 pKa = 7.41EE2 pKa = 5.55LVHH5 pKa = 7.33DD6 pKa = 4.6IDD8 pKa = 4.86DD9 pKa = 4.24ASEE12 pKa = 4.06AMALTANGAHH22 pKa = 6.62EE23 pKa = 4.48EE24 pKa = 4.35YY25 pKa = 9.98IGASMLPGIQGLYY38 pKa = 10.07

Molecular weight: 4.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S4SGS1|S4SGS1_9CAUD Putative holin-like class I OS=Salmonella phage vB_SenS_AG11 OX=1211279 GN=AG11_57 PE=4 SV=1
MM1 pKa = 7.61KK2 pKa = 10.34PNDD5 pKa = 3.53LVTWAGRR12 pKa = 11.84NGEE15 pKa = 4.18TRR17 pKa = 11.84HH18 pKa = 5.66GKK20 pKa = 8.01VTALQGIYY28 pKa = 10.7ARR30 pKa = 11.84VEE32 pKa = 3.33WWRR35 pKa = 11.84AHH37 pKa = 5.21AKK39 pKa = 9.39KK40 pKa = 9.94PRR42 pKa = 11.84YY43 pKa = 8.21LTVRR47 pKa = 11.84RR48 pKa = 11.84DD49 pKa = 3.49KK50 pKa = 11.41LIVKK54 pKa = 9.6

Molecular weight: 6.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

66

0

66

13005

36

1032

197.0

21.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.765 ± 0.679

1.015 ± 0.151

6.136 ± 0.26

6.636 ± 0.372

3.683 ± 0.181

7.712 ± 0.32

1.676 ± 0.196

4.852 ± 0.194

5.913 ± 0.331

7.782 ± 0.286

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.722 ± 0.181

4.275 ± 0.211

3.945 ± 0.228

3.783 ± 0.391

5.698 ± 0.207

5.821 ± 0.25

6.459 ± 0.327

7.282 ± 0.334

1.453 ± 0.167

3.391 ± 0.199
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski