Roseomonas rosea

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5011 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M6MB58|A0A1M6MB58_9PROT Dolichol-phosphate mannosyltransferase OS=Roseomonas rosea OX=198092 GN=SAMN02745194_03415 PE=4 SV=1
MM1 pKa = 7.9PATTSPSASGTPAIDD16 pKa = 3.55GLLAGTAWAGHH27 pKa = 5.6SLTYY31 pKa = 10.53SFPGSAADD39 pKa = 4.01LSDD42 pKa = 3.59YY43 pKa = 10.68SAPNAVDD50 pKa = 3.61PSYY53 pKa = 11.45VAALSSGQQDD63 pKa = 3.81TVRR66 pKa = 11.84GMLVAFGAVANITFSEE82 pKa = 4.93AITPSGGDD90 pKa = 3.33LRR92 pKa = 11.84LYY94 pKa = 9.86WYY96 pKa = 7.65EE97 pKa = 4.35APDD100 pKa = 3.53NYY102 pKa = 9.82TARR105 pKa = 11.84TVEE108 pKa = 4.45FPSANPEE115 pKa = 4.12AGDD118 pKa = 3.85VQLGAYY124 pKa = 7.51VVPGFVDD131 pKa = 3.0QWTLGSYY138 pKa = 10.46SYY140 pKa = 9.47FTILHH145 pKa = 5.95EE146 pKa = 4.91LGHH149 pKa = 6.52ALGLKK154 pKa = 9.8HH155 pKa = 6.56PHH157 pKa = 6.93DD158 pKa = 4.68EE159 pKa = 4.6VNGFPPIPAAQDD171 pKa = 3.57SIEE174 pKa = 3.96YY175 pKa = 10.47SIMSYY180 pKa = 10.43RR181 pKa = 11.84SYY183 pKa = 11.2AGQDD187 pKa = 3.08FGGYY191 pKa = 6.37TVQSGSYY198 pKa = 9.79PSGPMLNDD206 pKa = 3.21IAALQYY212 pKa = 11.02LYY214 pKa = 10.89GANWTTNSGDD224 pKa = 3.05TTYY227 pKa = 11.21RR228 pKa = 11.84FDD230 pKa = 3.85PEE232 pKa = 3.98QAVVFQTIWDD242 pKa = 3.87GGGEE246 pKa = 4.06DD247 pKa = 4.3TYY249 pKa = 11.89DD250 pKa = 3.44LSAYY254 pKa = 8.44GTDD257 pKa = 4.13LVISLDD263 pKa = 3.42PGGWSRR269 pKa = 11.84FGGQYY274 pKa = 11.07AVLDD278 pKa = 4.08TQDD281 pKa = 2.86GRR283 pKa = 11.84EE284 pKa = 4.31AIGNVANAYY293 pKa = 9.98LYY295 pKa = 10.76QGDD298 pKa = 4.22LRR300 pKa = 11.84SLIEE304 pKa = 3.87NAIGGSGNDD313 pKa = 4.04EE314 pKa = 3.75ITGNAGANALTGGAGDD330 pKa = 3.59DD331 pKa = 3.83TLRR334 pKa = 11.84GGLGDD339 pKa = 3.69DD340 pKa = 3.82VLRR343 pKa = 11.84GGSGIDD349 pKa = 3.43LMVGGEE355 pKa = 4.24GSDD358 pKa = 3.64TYY360 pKa = 11.21HH361 pKa = 6.72VDD363 pKa = 3.28SVGDD367 pKa = 3.73RR368 pKa = 11.84VRR370 pKa = 11.84EE371 pKa = 3.9AAGEE375 pKa = 4.27GGDD378 pKa = 4.06VVWTGVDD385 pKa = 3.0WTLEE389 pKa = 3.79AGQAVEE395 pKa = 4.71VIRR398 pKa = 11.84ANAGEE403 pKa = 4.44AGLTLTGNEE412 pKa = 3.96LGNWLVSGAGADD424 pKa = 3.87LLIGGLGNDD433 pKa = 3.26SLYY436 pKa = 11.42VNSAEE441 pKa = 4.07DD442 pKa = 3.23RR443 pKa = 11.84VVEE446 pKa = 4.34LVGQGSDD453 pKa = 3.31TVFASASYY461 pKa = 9.46TLAAGQEE468 pKa = 4.14IEE470 pKa = 4.37ILRR473 pKa = 11.84ANAGATGLVLAGNDD487 pKa = 2.85IANRR491 pKa = 11.84IVGGDD496 pKa = 3.53GADD499 pKa = 3.56TLSGALGQDD508 pKa = 2.88TLMGGEE514 pKa = 4.11GADD517 pKa = 3.23VFRR520 pKa = 11.84FSSLAEE526 pKa = 4.32SPASMLRR533 pKa = 11.84DD534 pKa = 3.78YY535 pKa = 11.18ISDD538 pKa = 3.95FVSGVDD544 pKa = 5.5LINLSAIQAVAGAAVDD560 pKa = 3.51AAFTFLDD567 pKa = 3.71KK568 pKa = 11.42DD569 pKa = 3.91SFTKK573 pKa = 10.5QAGQLHH579 pKa = 5.61QIKK582 pKa = 10.24AGSNTVVEE590 pKa = 4.48GDD592 pKa = 3.62VNGDD596 pKa = 2.97GRR598 pKa = 11.84ADD600 pKa = 3.62LQILLKK606 pKa = 10.89GHH608 pKa = 7.44LDD610 pKa = 3.68LEE612 pKa = 5.34AGDD615 pKa = 4.39FLLL618 pKa = 5.79

Molecular weight: 63.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M6Q9A7|A0A1M6Q9A7_9PROT General L-amino acid transport system substrate-binding protein OS=Roseomonas rosea OX=198092 GN=SAMN02745194_04339 PE=3 SV=1
MM1 pKa = 7.34LVGRR5 pKa = 11.84IAKK8 pKa = 9.96ALIGAAIRR16 pKa = 11.84RR17 pKa = 11.84QQNRR21 pKa = 11.84ALGSIGLGGWKK32 pKa = 9.78LHH34 pKa = 6.6LFRR37 pKa = 11.84AVQAAMRR44 pKa = 11.84QGRR47 pKa = 11.84RR48 pKa = 11.84GPGQPMPRR56 pKa = 11.84PPRR59 pKa = 11.84RR60 pKa = 11.84DD61 pKa = 2.91IGG63 pKa = 3.55

Molecular weight: 6.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5011

0

5011

1607065

39

2482

320.7

34.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.729 ± 0.055

0.768 ± 0.009

4.94 ± 0.024

5.845 ± 0.033

3.207 ± 0.019

9.496 ± 0.036

1.999 ± 0.017

4.026 ± 0.023

1.907 ± 0.023

10.926 ± 0.043

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.439 ± 0.016

2.047 ± 0.016

6.412 ± 0.027

2.815 ± 0.017

8.556 ± 0.036

4.592 ± 0.021

4.896 ± 0.021

7.243 ± 0.026

1.42 ± 0.015

1.738 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski