Clerodendrum golden mosaic China virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.9

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C5J9H3|C5J9H3_9GEMI Capsid protein OS=Clerodendrum golden mosaic China virus OX=559878 GN=AV1 PE=3 SV=1
MM1 pKa = 7.19LTGHH5 pKa = 6.3TCMSDD10 pKa = 2.53MWDD13 pKa = 3.37PLVNEE18 pKa = 4.72FPEE21 pKa = 4.71TVHH24 pKa = 7.1GLRR27 pKa = 11.84CMLAVKK33 pKa = 9.45YY34 pKa = 10.39LKK36 pKa = 10.56YY37 pKa = 10.85VEE39 pKa = 4.33NTYY42 pKa = 11.14SPDD45 pKa = 3.18TLGYY49 pKa = 10.79DD50 pKa = 4.38LIRR53 pKa = 11.84DD54 pKa = 3.93LVLVIRR60 pKa = 11.84AKK62 pKa = 10.86NYY64 pKa = 9.67GEE66 pKa = 3.55ATRR69 pKa = 11.84RR70 pKa = 11.84YY71 pKa = 8.16NHH73 pKa = 5.85FHH75 pKa = 6.76ARR77 pKa = 11.84LQGSTEE83 pKa = 3.9VEE85 pKa = 3.71LRR87 pKa = 11.84QPVSEE92 pKa = 4.49PCACPHH98 pKa = 6.68CPRR101 pKa = 11.84HH102 pKa = 5.62TKK104 pKa = 9.11TVMGQQAHH112 pKa = 4.99VSEE115 pKa = 4.78AQTIPSVPGPP125 pKa = 3.57

Molecular weight: 14.15 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C5J9H4|C5J9H4_9GEMI Replication enhancer OS=Clerodendrum golden mosaic China virus OX=559878 GN=AC3 PE=3 SV=1
MM1 pKa = 7.9AKK3 pKa = 10.08RR4 pKa = 11.84PGDD7 pKa = 3.87IIISTPVSKK16 pKa = 10.56VRR18 pKa = 11.84RR19 pKa = 11.84RR20 pKa = 11.84LNFDD24 pKa = 2.94SPYY27 pKa = 9.63QSRR30 pKa = 11.84VPALTARR37 pKa = 11.84GTRR40 pKa = 11.84KK41 pKa = 9.4QLWANRR47 pKa = 11.84PMYY50 pKa = 10.08RR51 pKa = 11.84KK52 pKa = 8.83PRR54 pKa = 11.84LYY56 pKa = 10.31RR57 pKa = 11.84VFRR60 pKa = 11.84GPDD63 pKa = 3.18VPRR66 pKa = 11.84GCEE69 pKa = 4.34GPCKK73 pKa = 10.21VQSFEE78 pKa = 3.84QRR80 pKa = 11.84HH81 pKa = 6.27DD82 pKa = 3.18IAHH85 pKa = 6.13TGKK88 pKa = 10.45VICISDD94 pKa = 3.51VTRR97 pKa = 11.84GNGITHH103 pKa = 6.78RR104 pKa = 11.84VGKK107 pKa = 9.44RR108 pKa = 11.84FCVKK112 pKa = 9.94SVYY115 pKa = 10.62VLGKK119 pKa = 9.71VWMDD123 pKa = 3.25EE124 pKa = 4.06NIKK127 pKa = 9.31TKK129 pKa = 10.61NHH131 pKa = 5.92TNTVMFYY138 pKa = 9.52VVRR141 pKa = 11.84DD142 pKa = 3.66RR143 pKa = 11.84RR144 pKa = 11.84PYY146 pKa = 7.97GTPMDD151 pKa = 4.6FGQVFNMYY159 pKa = 10.66DD160 pKa = 3.86NEE162 pKa = 4.36PSTATIKK169 pKa = 10.92NDD171 pKa = 2.93LRR173 pKa = 11.84DD174 pKa = 3.55RR175 pKa = 11.84FQVIRR180 pKa = 11.84KK181 pKa = 8.86FYY183 pKa = 8.92STVTGGQYY191 pKa = 10.82ASKK194 pKa = 10.24EE195 pKa = 3.73QALVKK200 pKa = 10.66KK201 pKa = 9.99FMRR204 pKa = 11.84VNNHH208 pKa = 4.32VVYY211 pKa = 10.63NHH213 pKa = 5.84QEE215 pKa = 3.45AAKK218 pKa = 10.4YY219 pKa = 9.25EE220 pKa = 4.13NHH222 pKa = 6.46TEE224 pKa = 3.99NALLLYY230 pKa = 9.55MAGTHH235 pKa = 6.51ASNPVYY241 pKa = 9.86ATLKK245 pKa = 9.47IRR247 pKa = 11.84IYY249 pKa = 10.67FYY251 pKa = 11.26DD252 pKa = 3.51SVSNN256 pKa = 3.9

Molecular weight: 29.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

1667

96

362

208.4

23.66

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.099 ± 0.522

1.98 ± 0.209

4.799 ± 0.401

4.019 ± 0.606

3.839 ± 0.404

5.699 ± 0.25

3.719 ± 0.438

5.399 ± 0.72

4.679 ± 0.664

6.899 ± 0.588

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.22 ± 0.388

5.939 ± 0.512

5.879 ± 0.367

4.019 ± 0.446

7.499 ± 0.836

8.998 ± 1.219

6.779 ± 0.443

7.079 ± 0.919

1.26 ± 0.136

4.199 ± 0.568
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski