Corynebacterium maris DSM 45190

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium maris

Average proteome isoelectric point is 5.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2584 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|S5SV54|S5SV54_9CORY Exopolyphosphatase OS=Corynebacterium maris DSM 45190 OX=1224163 GN=B841_07980 PE=4 SV=1
MM1 pKa = 7.51SPDD4 pKa = 3.25QSRR7 pKa = 11.84TSPPASARR15 pKa = 11.84NRR17 pKa = 11.84TGLLWSIAAVLAVLIVGLVIAIIALQTSGNSDD49 pKa = 3.18VTQADD54 pKa = 4.5DD55 pKa = 3.48LTEE58 pKa = 3.9THH60 pKa = 5.96VAEE63 pKa = 4.33EE64 pKa = 4.51TVVVTDD70 pKa = 3.85TTAADD75 pKa = 3.5PTEE78 pKa = 4.83PGEE81 pKa = 4.38STPPAATTSTTQGEE95 pKa = 4.55TRR97 pKa = 11.84DD98 pKa = 3.67DD99 pKa = 3.5ATEE102 pKa = 3.75VRR104 pKa = 11.84RR105 pKa = 11.84ISPVTDD111 pKa = 2.93DD112 pKa = 3.26WLPRR116 pKa = 11.84DD117 pKa = 3.31GWTVTNTTEE126 pKa = 4.02MMQGDD131 pKa = 5.65CYY133 pKa = 10.18PSPVALDD140 pKa = 3.62DD141 pKa = 4.63GIYY144 pKa = 10.23RR145 pKa = 11.84CGPSAMSANACFHH158 pKa = 6.43NPDD161 pKa = 3.71SGVFYY166 pKa = 10.98CPFNPFTPEE175 pKa = 3.04FRR177 pKa = 11.84AYY179 pKa = 10.35YY180 pKa = 8.96FAGEE184 pKa = 4.13ITHH187 pKa = 6.43TPVIDD192 pKa = 5.55DD193 pKa = 3.83PMPWGLEE200 pKa = 3.77LDD202 pKa = 4.36DD203 pKa = 5.92ARR205 pKa = 11.84QCTARR210 pKa = 11.84QGGAWGWRR218 pKa = 11.84ADD220 pKa = 4.28DD221 pKa = 3.68YY222 pKa = 11.84VGAYY226 pKa = 9.68SCGGGSDD233 pKa = 3.86EE234 pKa = 5.96VILALPGEE242 pKa = 4.34PVVDD246 pKa = 4.96DD247 pKa = 5.91SDD249 pKa = 5.24DD250 pKa = 3.25KK251 pKa = 11.01WAVLMGEE258 pKa = 4.4MGQGEE263 pKa = 5.46DD264 pKa = 4.6FPAPQPVGVAVAYY277 pKa = 9.34YY278 pKa = 10.6AGWQDD283 pKa = 3.06

Molecular weight: 30.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|S5SR58|S5SR58_9CORY Short chain dehydrogenase OS=Corynebacterium maris DSM 45190 OX=1224163 GN=B841_00405 PE=3 SV=1
MM1 pKa = 7.7AKK3 pKa = 10.02GKK5 pKa = 8.53KK6 pKa = 7.65TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84SRR17 pKa = 11.84KK18 pKa = 8.53HH19 pKa = 4.82GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84KK40 pKa = 9.65GRR42 pKa = 11.84ASVTAA47 pKa = 4.08

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2584

0

2584

833534

38

3013

322.6

34.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.31 ± 0.056

0.568 ± 0.011

6.629 ± 0.039

6.467 ± 0.05

3.145 ± 0.029

8.604 ± 0.043

2.199 ± 0.022

4.425 ± 0.035

2.529 ± 0.036

9.786 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.161 ± 0.021

2.442 ± 0.029

5.189 ± 0.037

3.15 ± 0.027

6.544 ± 0.042

5.349 ± 0.028

6.184 ± 0.028

8.683 ± 0.044

1.457 ± 0.021

2.18 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski