Charleville virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Sripuvirus; Charleville sripuvirus

Average proteome isoelectric point is 6.32

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3Q8TND9|A0A3Q8TND9_9RHAB Gx OS=Charleville virus OX=318842 GN=Gx PE=4 SV=1
MM1 pKa = 7.51NNLLSCKK8 pKa = 10.48DD9 pKa = 4.17KK10 pKa = 10.98IPKK13 pKa = 9.71NLLLAAIQVEE23 pKa = 4.71SKK25 pKa = 10.95NNEE28 pKa = 3.73SSKK31 pKa = 10.98LFGPQEE37 pKa = 4.04FQEE40 pKa = 4.51DD41 pKa = 4.63SPTEE45 pKa = 3.96SDD47 pKa = 3.55GGSSSSHH54 pKa = 6.31KK55 pKa = 10.66SFTPASPVDD64 pKa = 3.58ARR66 pKa = 11.84CYY68 pKa = 8.21TIPGIGLPKK77 pKa = 9.48TQEE80 pKa = 3.86EE81 pKa = 4.84LNNRR85 pKa = 11.84IASLLGAVFEE95 pKa = 4.6TTGLSISGLKK105 pKa = 8.27VTANSITFHH114 pKa = 6.59EE115 pKa = 4.41IEE117 pKa = 4.11EE118 pKa = 4.66DD119 pKa = 3.43EE120 pKa = 4.71LEE122 pKa = 4.09EE123 pKa = 4.78SEE125 pKa = 4.23RR126 pKa = 11.84TEE128 pKa = 4.02SGGSSEE134 pKa = 5.64LIKK137 pKa = 10.55FDD139 pKa = 3.7SKK141 pKa = 11.71SPGGTNPFLPAEE153 pKa = 4.43KK154 pKa = 9.86SISPIPEE161 pKa = 3.97VSSMIQDD168 pKa = 3.7FLAEE172 pKa = 4.38LEE174 pKa = 4.11AGFYY178 pKa = 8.6LTSITNKK185 pKa = 9.57PLYY188 pKa = 10.24VDD190 pKa = 3.91RR191 pKa = 11.84KK192 pKa = 10.29KK193 pKa = 10.54LTLTKK198 pKa = 10.55EE199 pKa = 4.44SILLWEE205 pKa = 4.5TQPGWSKK212 pKa = 9.96TKK214 pKa = 10.18ILRR217 pKa = 11.84EE218 pKa = 3.59ACKK221 pKa = 9.73RR222 pKa = 11.84DD223 pKa = 3.09KK224 pKa = 11.0VLRR227 pKa = 11.84GKK229 pKa = 10.68LGMVSWTDD237 pKa = 3.36SLQNDD242 pKa = 3.92PP243 pKa = 5.11

Molecular weight: 26.66 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S8TMQ0|A0A3S8TMQ0_9RHAB Matrix protein OS=Charleville virus OX=318842 GN=M PE=4 SV=1
MM1 pKa = 7.6LIEE4 pKa = 5.02SGLKK8 pKa = 8.49VTYY11 pKa = 10.02QVGVQEE17 pKa = 4.31EE18 pKa = 4.71SVEE21 pKa = 4.1KK22 pKa = 10.65LLSEE26 pKa = 4.38EE27 pKa = 4.22VTGTRR32 pKa = 11.84GRR34 pKa = 11.84TLSKK38 pKa = 10.09SYY40 pKa = 10.46KK41 pKa = 9.72RR42 pKa = 11.84QGTLLSQFPNCC53 pKa = 4.95

Molecular weight: 5.92 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3518

53

2090

502.6

57.46

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.781 ± 0.825

2.16 ± 0.162

4.775 ± 0.396

7.106 ± 0.538

4.491 ± 0.31

6.168 ± 0.543

2.302 ± 0.291

8.13 ± 0.96

7.192 ± 0.3

9.75 ± 1.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.615 ± 0.304

5.088 ± 0.834

4.036 ± 0.619

3.07 ± 0.215

4.775 ± 0.443

7.789 ± 1.095

6.339 ± 0.166

5.003 ± 0.657

1.819 ± 0.288

3.61 ± 0.52
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski