Amino acid dipepetide frequency for Hubei coleoptera virus 2

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.102AlaAla: 3.102 ± 0.0
0.282AlaCys: 0.282 ± 0.0
1.128AlaAsp: 1.128 ± 0.0
5.64AlaGlu: 5.64 ± 0.0
1.41AlaPhe: 1.41 ± 0.0
2.82AlaGly: 2.82 ± 0.0
1.128AlaHis: 1.128 ± 0.0
3.102AlaIle: 3.102 ± 0.0
1.974AlaLys: 1.974 ± 0.0
3.384AlaLeu: 3.384 ± 0.0
2.256AlaMet: 2.256 ± 0.0
4.512AlaAsn: 4.512 ± 0.0
1.128AlaPro: 1.128 ± 0.0
2.82AlaGln: 2.82 ± 0.0
3.666AlaArg: 3.666 ± 0.0
4.512AlaSer: 4.512 ± 0.0
6.204AlaThr: 6.204 ± 0.0
3.666AlaVal: 3.666 ± 0.0
0.564AlaTrp: 0.564 ± 0.0
2.538AlaTyr: 2.538 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
0.0CysAla: 0.0 ± 0.0
0.0CysCys: 0.0 ± 0.0
0.564CysAsp: 0.564 ± 0.0
1.128CysGlu: 1.128 ± 0.0
0.282CysPhe: 0.282 ± 0.0
0.282CysGly: 0.282 ± 0.0
0.0CysHis: 0.0 ± 0.0
0.282CysIle: 0.282 ± 0.0
0.282CysLys: 0.282 ± 0.0
0.0CysLeu: 0.0 ± 0.0
0.0CysMet: 0.0 ± 0.0
1.41CysAsn: 1.41 ± 0.0
0.564CysPro: 0.564 ± 0.0
0.564CysGln: 0.564 ± 0.0
0.282CysArg: 0.282 ± 0.0
0.564CysSer: 0.564 ± 0.0
0.0CysThr: 0.0 ± 0.0
0.846CysVal: 0.846 ± 0.0
0.0CysTrp: 0.0 ± 0.0
0.564CysTyr: 0.564 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
2.538AspAla: 2.538 ± 0.0
0.282AspCys: 0.282 ± 0.0
3.102AspAsp: 3.102 ± 0.0
1.974AspGlu: 1.974 ± 0.0
2.538AspPhe: 2.538 ± 0.0
1.41AspGly: 1.41 ± 0.0
0.564AspHis: 0.564 ± 0.0
2.256AspIle: 2.256 ± 0.0
3.666AspLys: 3.666 ± 0.0
4.23AspLeu: 4.23 ± 0.0
1.41AspMet: 1.41 ± 0.0
3.666AspAsn: 3.666 ± 0.0
1.974AspPro: 1.974 ± 0.0
2.256AspGln: 2.256 ± 0.0
3.384AspArg: 3.384 ± 0.0
2.82AspSer: 2.82 ± 0.0
4.23AspThr: 4.23 ± 0.0
3.666AspVal: 3.666 ± 0.0
0.282AspTrp: 0.282 ± 0.0
1.974AspTyr: 1.974 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.794GluAla: 4.794 ± 0.0
0.846GluCys: 0.846 ± 0.0
3.102GluAsp: 3.102 ± 0.0
7.05GluGlu: 7.05 ± 0.0
3.102GluPhe: 3.102 ± 0.0
3.384GluGly: 3.384 ± 0.0
1.692GluHis: 1.692 ± 0.0
3.384GluIle: 3.384 ± 0.0
5.076GluLys: 5.076 ± 0.0
5.358GluLeu: 5.358 ± 0.0
2.256GluMet: 2.256 ± 0.0
5.64GluAsn: 5.64 ± 0.0
1.974GluPro: 1.974 ± 0.0
2.256GluGln: 2.256 ± 0.0
1.974GluArg: 1.974 ± 0.0
1.692GluSer: 1.692 ± 0.0
3.384GluThr: 3.384 ± 0.0
4.512GluVal: 4.512 ± 0.0
1.41GluTrp: 1.41 ± 0.0
1.692GluTyr: 1.692 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
3.384PheAla: 3.384 ± 0.0
0.564PheCys: 0.564 ± 0.0
0.846PheAsp: 0.846 ± 0.0
2.256PheGlu: 2.256 ± 0.0
1.974PhePhe: 1.974 ± 0.0
1.41PheGly: 1.41 ± 0.0
1.128PheHis: 1.128 ± 0.0
3.102PheIle: 3.102 ± 0.0
1.974PheLys: 1.974 ± 0.0
5.076PheLeu: 5.076 ± 0.0
1.128PheMet: 1.128 ± 0.0
2.538PheAsn: 2.538 ± 0.0
2.256PhePro: 2.256 ± 0.0
1.692PheGln: 1.692 ± 0.0
0.846PheArg: 0.846 ± 0.0
2.256PheSer: 2.256 ± 0.0
2.82PheThr: 2.82 ± 0.0
3.948PheVal: 3.948 ± 0.0
0.564PheTrp: 0.564 ± 0.0
2.256PheTyr: 2.256 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
2.82GlyAla: 2.82 ± 0.0
0.0GlyCys: 0.0 ± 0.0
1.974GlyAsp: 1.974 ± 0.0
4.23GlyGlu: 4.23 ± 0.0
3.384GlyPhe: 3.384 ± 0.0
1.692GlyGly: 1.692 ± 0.0
1.41GlyHis: 1.41 ± 0.0
4.794GlyIle: 4.794 ± 0.0
2.82GlyLys: 2.82 ± 0.0
3.384GlyLeu: 3.384 ± 0.0
2.256GlyMet: 2.256 ± 0.0
4.23GlyAsn: 4.23 ± 0.0
1.974GlyPro: 1.974 ± 0.0
1.41GlyGln: 1.41 ± 0.0
1.41GlyArg: 1.41 ± 0.0
3.666GlySer: 3.666 ± 0.0
4.512GlyThr: 4.512 ± 0.0
4.23GlyVal: 4.23 ± 0.0
0.564GlyTrp: 0.564 ± 0.0
3.102GlyTyr: 3.102 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
1.128HisAla: 1.128 ± 0.0
0.282HisCys: 0.282 ± 0.0
0.846HisAsp: 0.846 ± 0.0
0.846HisGlu: 0.846 ± 0.0
1.41HisPhe: 1.41 ± 0.0
0.846HisGly: 0.846 ± 0.0
0.846HisHis: 0.846 ± 0.0
3.102HisIle: 3.102 ± 0.0
0.564HisLys: 0.564 ± 0.0
0.846HisLeu: 0.846 ± 0.0
1.128HisMet: 1.128 ± 0.0
0.282HisAsn: 0.282 ± 0.0
1.128HisPro: 1.128 ± 0.0
0.564HisGln: 0.564 ± 0.0
0.846HisArg: 0.846 ± 0.0
1.974HisSer: 1.974 ± 0.0
1.128HisThr: 1.128 ± 0.0
1.692HisVal: 1.692 ± 0.0
0.0HisTrp: 0.0 ± 0.0
0.846HisTyr: 0.846 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
4.512IleAla: 4.512 ± 0.0
0.282IleCys: 0.282 ± 0.0
3.948IleAsp: 3.948 ± 0.0
3.666IleGlu: 3.666 ± 0.0
1.128IlePhe: 1.128 ± 0.0
4.23IleGly: 4.23 ± 0.0
1.41IleHis: 1.41 ± 0.0
5.64IleIle: 5.64 ± 0.0
3.666IleLys: 3.666 ± 0.0
5.076IleLeu: 5.076 ± 0.0
1.692IleMet: 1.692 ± 0.0
5.64IleAsn: 5.64 ± 0.0
2.538IlePro: 2.538 ± 0.0
2.538IleGln: 2.538 ± 0.0
4.512IleArg: 4.512 ± 0.0
4.23IleSer: 4.23 ± 0.0
7.332IleThr: 7.332 ± 0.0
4.794IleVal: 4.794 ± 0.0
0.282IleTrp: 0.282 ± 0.0
3.948IleTyr: 3.948 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.538LysAla: 2.538 ± 0.0
0.0LysCys: 0.0 ± 0.0
4.23LysAsp: 4.23 ± 0.0
4.794LysGlu: 4.794 ± 0.0
1.974LysPhe: 1.974 ± 0.0
3.384LysGly: 3.384 ± 0.0
1.974LysHis: 1.974 ± 0.0
3.666LysIle: 3.666 ± 0.0
3.384LysLys: 3.384 ± 0.0
3.666LysLeu: 3.666 ± 0.0
1.974LysMet: 1.974 ± 0.0
4.512LysAsn: 4.512 ± 0.0
2.256LysPro: 2.256 ± 0.0
2.82LysGln: 2.82 ± 0.0
2.82LysArg: 2.82 ± 0.0
2.82LysSer: 2.82 ± 0.0
4.794LysThr: 4.794 ± 0.0
3.948LysVal: 3.948 ± 0.0
0.282LysTrp: 0.282 ± 0.0
2.538LysTyr: 2.538 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
3.384LeuAla: 3.384 ± 0.0
0.282LeuCys: 0.282 ± 0.0
4.794LeuAsp: 4.794 ± 0.0
6.204LeuGlu: 6.204 ± 0.0
2.82LeuPhe: 2.82 ± 0.0
5.922LeuGly: 5.922 ± 0.0
1.41LeuHis: 1.41 ± 0.0
5.922LeuIle: 5.922 ± 0.0
6.768LeuLys: 6.768 ± 0.0
3.102LeuLeu: 3.102 ± 0.0
2.538LeuMet: 2.538 ± 0.0
3.102LeuAsn: 3.102 ± 0.0
3.948LeuPro: 3.948 ± 0.0
4.794LeuGln: 4.794 ± 0.0
3.948LeuArg: 3.948 ± 0.0
6.204LeuSer: 6.204 ± 0.0
5.64LeuThr: 5.64 ± 0.0
5.358LeuVal: 5.358 ± 0.0
0.564LeuTrp: 0.564 ± 0.0
2.256LeuTyr: 2.256 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.974MetAla: 1.974 ± 0.0
0.0MetCys: 0.0 ± 0.0
2.538MetAsp: 2.538 ± 0.0
3.102MetGlu: 3.102 ± 0.0
1.128MetPhe: 1.128 ± 0.0
0.846MetGly: 0.846 ± 0.0
0.282MetHis: 0.282 ± 0.0
2.82MetIle: 2.82 ± 0.0
2.256MetLys: 2.256 ± 0.0
3.102MetLeu: 3.102 ± 0.0
1.128MetMet: 1.128 ± 0.0
1.692MetAsn: 1.692 ± 0.0
2.256MetPro: 2.256 ± 0.0
2.538MetGln: 2.538 ± 0.0
0.846MetArg: 0.846 ± 0.0
1.41MetSer: 1.41 ± 0.0
1.41MetThr: 1.41 ± 0.0
1.692MetVal: 1.692 ± 0.0
0.564MetTrp: 0.564 ± 0.0
0.564MetTyr: 0.564 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
3.666AsnAla: 3.666 ± 0.0
0.282AsnCys: 0.282 ± 0.0
1.974AsnAsp: 1.974 ± 0.0
1.974AsnGlu: 1.974 ± 0.0
4.794AsnPhe: 4.794 ± 0.0
4.512AsnGly: 4.512 ± 0.0
1.41AsnHis: 1.41 ± 0.0
5.64AsnIle: 5.64 ± 0.0
3.102AsnLys: 3.102 ± 0.0
5.922AsnLeu: 5.922 ± 0.0
1.974AsnMet: 1.974 ± 0.0
4.794AsnAsn: 4.794 ± 0.0
2.82AsnPro: 2.82 ± 0.0
1.974AsnGln: 1.974 ± 0.0
1.974AsnArg: 1.974 ± 0.0
4.512AsnSer: 4.512 ± 0.0
4.794AsnThr: 4.794 ± 0.0
7.332AsnVal: 7.332 ± 0.0
0.564AsnTrp: 0.564 ± 0.0
3.384AsnTyr: 3.384 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
2.538ProAla: 2.538 ± 0.0
0.282ProCys: 0.282 ± 0.0
1.974ProAsp: 1.974 ± 0.0
2.256ProGlu: 2.256 ± 0.0
1.41ProPhe: 1.41 ± 0.0
3.384ProGly: 3.384 ± 0.0
2.256ProHis: 2.256 ± 0.0
1.974ProIle: 1.974 ± 0.0
1.974ProLys: 1.974 ± 0.0
4.23ProLeu: 4.23 ± 0.0
1.974ProMet: 1.974 ± 0.0
3.102ProAsn: 3.102 ± 0.0
0.846ProPro: 0.846 ± 0.0
1.41ProGln: 1.41 ± 0.0
2.82ProArg: 2.82 ± 0.0
3.948ProSer: 3.948 ± 0.0
1.692ProThr: 1.692 ± 0.0
2.256ProVal: 2.256 ± 0.0
0.282ProTrp: 0.282 ± 0.0
0.564ProTyr: 0.564 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.538GlnAla: 2.538 ± 0.0
0.282GlnCys: 0.282 ± 0.0
1.128GlnAsp: 1.128 ± 0.0
3.384GlnGlu: 3.384 ± 0.0
1.41GlnPhe: 1.41 ± 0.0
1.41GlnGly: 1.41 ± 0.0
0.846GlnHis: 0.846 ± 0.0
3.384GlnIle: 3.384 ± 0.0
1.974GlnLys: 1.974 ± 0.0
5.922GlnLeu: 5.922 ± 0.0
1.974GlnMet: 1.974 ± 0.0
1.692GlnAsn: 1.692 ± 0.0
2.538GlnPro: 2.538 ± 0.0
3.102GlnGln: 3.102 ± 0.0
1.974GlnArg: 1.974 ± 0.0
3.384GlnSer: 3.384 ± 0.0
1.41GlnThr: 1.41 ± 0.0
2.538GlnVal: 2.538 ± 0.0
0.846GlnTrp: 0.846 ± 0.0
1.41GlnTyr: 1.41 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
3.384ArgAla: 3.384 ± 0.0
0.846ArgCys: 0.846 ± 0.0
1.41ArgAsp: 1.41 ± 0.0
2.82ArgGlu: 2.82 ± 0.0
1.692ArgPhe: 1.692 ± 0.0
1.128ArgGly: 1.128 ± 0.0
0.0ArgHis: 0.0 ± 0.0
2.256ArgIle: 2.256 ± 0.0
3.948ArgLys: 3.948 ± 0.0
4.23ArgLeu: 4.23 ± 0.0
0.564ArgMet: 0.564 ± 0.0
3.102ArgAsn: 3.102 ± 0.0
1.692ArgPro: 1.692 ± 0.0
1.128ArgGln: 1.128 ± 0.0
3.384ArgArg: 3.384 ± 0.0
3.948ArgSer: 3.948 ± 0.0
4.23ArgThr: 4.23 ± 0.0
2.82ArgVal: 2.82 ± 0.0
0.564ArgTrp: 0.564 ± 0.0
1.692ArgTyr: 1.692 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.666SerAla: 3.666 ± 0.0
0.564SerCys: 0.564 ± 0.0
3.948SerAsp: 3.948 ± 0.0
3.948SerGlu: 3.948 ± 0.0
3.666SerPhe: 3.666 ± 0.0
4.512SerGly: 4.512 ± 0.0
0.0SerHis: 0.0 ± 0.0
5.358SerIle: 5.358 ± 0.0
3.384SerLys: 3.384 ± 0.0
7.05SerLeu: 7.05 ± 0.0
2.82SerMet: 2.82 ± 0.0
3.666SerAsn: 3.666 ± 0.0
2.538SerPro: 2.538 ± 0.0
2.82SerGln: 2.82 ± 0.0
2.82SerArg: 2.82 ± 0.0
5.64SerSer: 5.64 ± 0.0
5.922SerThr: 5.922 ± 0.0
4.23SerVal: 4.23 ± 0.0
1.692SerTrp: 1.692 ± 0.0
1.692SerTyr: 1.692 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
2.538ThrAla: 2.538 ± 0.0
0.846ThrCys: 0.846 ± 0.0
4.23ThrAsp: 4.23 ± 0.0
2.82ThrGlu: 2.82 ± 0.0
3.666ThrPhe: 3.666 ± 0.0
5.358ThrGly: 5.358 ± 0.0
2.256ThrHis: 2.256 ± 0.0
6.486ThrIle: 6.486 ± 0.0
3.384ThrLys: 3.384 ± 0.0
4.794ThrLeu: 4.794 ± 0.0
1.974ThrMet: 1.974 ± 0.0
3.948ThrAsn: 3.948 ± 0.0
3.948ThrPro: 3.948 ± 0.0
3.102ThrGln: 3.102 ± 0.0
3.384ThrArg: 3.384 ± 0.0
6.768ThrSer: 6.768 ± 0.0
7.332ThrThr: 7.332 ± 0.0
6.204ThrVal: 6.204 ± 0.0
0.846ThrTrp: 0.846 ± 0.0
3.384ThrTyr: 3.384 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.948ValAla: 3.948 ± 0.0
0.282ValCys: 0.282 ± 0.0
3.102ValAsp: 3.102 ± 0.0
3.666ValGlu: 3.666 ± 0.0
2.538ValPhe: 2.538 ± 0.0
4.512ValGly: 4.512 ± 0.0
0.846ValHis: 0.846 ± 0.0
5.076ValIle: 5.076 ± 0.0
3.666ValLys: 3.666 ± 0.0
5.64ValLeu: 5.64 ± 0.0
1.41ValMet: 1.41 ± 0.0
5.922ValAsn: 5.922 ± 0.0
2.538ValPro: 2.538 ± 0.0
3.102ValGln: 3.102 ± 0.0
1.692ValArg: 1.692 ± 0.0
4.794ValSer: 4.794 ± 0.0
6.486ValThr: 6.486 ± 0.0
6.486ValVal: 6.486 ± 0.0
0.564ValTrp: 0.564 ± 0.0
5.076ValTyr: 5.076 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.128TrpAla: 1.128 ± 0.0
0.282TrpCys: 0.282 ± 0.0
0.282TrpAsp: 0.282 ± 0.0
1.128TrpGlu: 1.128 ± 0.0
0.846TrpPhe: 0.846 ± 0.0
0.282TrpGly: 0.282 ± 0.0
0.0TrpHis: 0.0 ± 0.0
0.564TrpIle: 0.564 ± 0.0
1.41TrpLys: 1.41 ± 0.0
0.564TrpLeu: 0.564 ± 0.0
0.564TrpMet: 0.564 ± 0.0
0.564TrpAsn: 0.564 ± 0.0
0.846TrpPro: 0.846 ± 0.0
0.0TrpGln: 0.0 ± 0.0
0.564TrpArg: 0.564 ± 0.0
0.282TrpSer: 0.282 ± 0.0
0.846TrpThr: 0.846 ± 0.0
0.282TrpVal: 0.282 ± 0.0
0.0TrpTrp: 0.0 ± 0.0
0.0TrpTyr: 0.0 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.256TyrAla: 2.256 ± 0.0
1.128TyrCys: 1.128 ± 0.0
3.102TyrAsp: 3.102 ± 0.0
1.692TyrGlu: 1.692 ± 0.0
0.846TyrPhe: 0.846 ± 0.0
2.538TyrGly: 2.538 ± 0.0
0.846TyrHis: 0.846 ± 0.0
2.256TyrIle: 2.256 ± 0.0
3.102TyrLys: 3.102 ± 0.0
3.384TyrLeu: 3.384 ± 0.0
0.846TyrMet: 0.846 ± 0.0
3.666TyrAsn: 3.666 ± 0.0
1.41TyrPro: 1.41 ± 0.0
2.256TyrGln: 2.256 ± 0.0
1.692TyrArg: 1.692 ± 0.0
4.512TyrSer: 4.512 ± 0.0
3.102TyrThr: 3.102 ± 0.0
0.846TyrVal: 0.846 ± 0.0
0.0TyrTrp: 0.0 ± 0.0
1.974TyrTyr: 1.974 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (3547 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski