Pseudaminobacter salicylatoxidans

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Hyphomicrobiales; Phyllobacteriaceae; Pseudaminobacter

Average proteome isoelectric point is 6.52

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4695 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A316C148|A0A316C148_PSESE Ornithine carbamoyltransferase OS=Pseudaminobacter salicylatoxidans OX=93369 GN=C7441_110165 PE=3 SV=1
MM1 pKa = 8.01RR2 pKa = 11.84YY3 pKa = 9.56SFCHH7 pKa = 6.42TIHH10 pKa = 7.59DD11 pKa = 4.11EE12 pKa = 4.04ALGIDD17 pKa = 4.11VIYY20 pKa = 10.64DD21 pKa = 3.48IEE23 pKa = 4.69CEE25 pKa = 3.92IEE27 pKa = 4.3LSVVPDD33 pKa = 4.05AGAPQVSVDD42 pKa = 3.24GVYY45 pKa = 10.81VDD47 pKa = 4.57GKK49 pKa = 10.67NLFAGSAISKK59 pKa = 10.39AIAAEE64 pKa = 3.97IANAAVDD71 pKa = 5.09DD72 pKa = 5.03DD73 pKa = 5.23DD74 pKa = 3.95LTARR78 pKa = 11.84AIEE81 pKa = 4.47DD82 pKa = 3.12EE83 pKa = 4.43GFVYY87 pKa = 10.37RR88 pKa = 11.84GLGANDD94 pKa = 3.58PDD96 pKa = 3.4GRR98 pKa = 11.84YY99 pKa = 8.53VHH101 pKa = 6.7VSS103 pKa = 2.93

Molecular weight: 10.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A316BZT8|A0A316BZT8_PSESE Uncharacterized protein OS=Pseudaminobacter salicylatoxidans OX=93369 GN=C7441_112138 PE=4 SV=1
MM1 pKa = 7.92RR2 pKa = 11.84RR3 pKa = 11.84GLKK6 pKa = 10.1DD7 pKa = 3.76DD8 pKa = 4.02FLAYY12 pKa = 10.09VKK14 pKa = 10.52RR15 pKa = 11.84NPHH18 pKa = 5.67ANTRR22 pKa = 11.84EE23 pKa = 3.45IAAALDD29 pKa = 3.39CHH31 pKa = 5.85EE32 pKa = 4.91AYY34 pKa = 10.54VRR36 pKa = 11.84STARR40 pKa = 11.84RR41 pKa = 11.84QGIRR45 pKa = 11.84LASNGRR51 pKa = 11.84RR52 pKa = 11.84GRR54 pKa = 11.84PVAAAPKK61 pKa = 9.86FSRR64 pKa = 11.84PRR66 pKa = 11.84LRR68 pKa = 11.84IKK70 pKa = 9.99EE71 pKa = 3.87FRR73 pKa = 11.84GTPEE77 pKa = 3.9QYY79 pKa = 10.34DD80 pKa = 3.37ALARR84 pKa = 11.84KK85 pKa = 8.68VALVDD90 pKa = 4.28LEE92 pKa = 5.05HH93 pKa = 7.34RR94 pKa = 11.84DD95 pKa = 3.91CRR97 pKa = 11.84WPVGDD102 pKa = 5.11PRR104 pKa = 11.84DD105 pKa = 3.72TDD107 pKa = 4.14FGFCGHH113 pKa = 6.53IKK115 pKa = 10.47EE116 pKa = 4.62PGKK119 pKa = 9.73PYY121 pKa = 9.97CAHH124 pKa = 5.86HH125 pKa = 5.53QRR127 pKa = 11.84RR128 pKa = 11.84SEE130 pKa = 4.12GGGTPAGRR138 pKa = 11.84SAHH141 pKa = 6.32RR142 pKa = 11.84VQAA145 pKa = 3.9

Molecular weight: 16.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4695

0

4695

1431895

29

3888

305.0

33.16

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.238 ± 0.05

0.799 ± 0.011

5.626 ± 0.033

5.927 ± 0.033

3.862 ± 0.024

8.583 ± 0.046

2.029 ± 0.017

5.447 ± 0.028

3.523 ± 0.027

9.829 ± 0.038

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.645 ± 0.016

2.722 ± 0.02

4.984 ± 0.026

3.035 ± 0.022

7.009 ± 0.039

5.438 ± 0.025

5.279 ± 0.025

7.443 ± 0.031

1.312 ± 0.015

2.27 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski