Amino acid dipepetide frequency for Phomopsis longicolla hypovirus

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
3.512AlaAla: 3.512 ± 0.0
0.351AlaCys: 0.351 ± 0.0
2.107AlaAsp: 2.107 ± 0.0
3.512AlaGlu: 3.512 ± 0.0
4.215AlaPhe: 4.215 ± 0.0
5.62AlaGly: 5.62 ± 0.0
0.702AlaHis: 0.702 ± 0.0
1.756AlaIle: 1.756 ± 0.0
3.161AlaLys: 3.161 ± 0.0
5.62AlaLeu: 5.62 ± 0.0
3.161AlaMet: 3.161 ± 0.0
1.756AlaAsn: 1.756 ± 0.0
1.756AlaPro: 1.756 ± 0.0
5.62AlaGln: 5.62 ± 0.0
3.512AlaArg: 3.512 ± 0.0
4.215AlaSer: 4.215 ± 0.0
4.215AlaThr: 4.215 ± 0.0
4.917AlaVal: 4.917 ± 0.0
1.756AlaTrp: 1.756 ± 0.0
2.107AlaTyr: 2.107 ± 0.0
0.0AlaXaa: 0.0 ± 0.0
Cys
1.756CysAla: 1.756 ± 0.0
1.054CysCys: 1.054 ± 0.0
0.702CysAsp: 0.702 ± 0.0
2.459CysGlu: 2.459 ± 0.0
0.351CysPhe: 0.351 ± 0.0
1.054CysGly: 1.054 ± 0.0
0.702CysHis: 0.702 ± 0.0
0.351CysIle: 0.351 ± 0.0
0.351CysLys: 0.351 ± 0.0
1.405CysLeu: 1.405 ± 0.0
0.0CysMet: 0.0 ± 0.0
0.702CysAsn: 0.702 ± 0.0
1.756CysPro: 1.756 ± 0.0
0.0CysGln: 0.0 ± 0.0
0.351CysArg: 0.351 ± 0.0
0.702CysSer: 0.702 ± 0.0
0.702CysThr: 0.702 ± 0.0
1.756CysVal: 1.756 ± 0.0
0.351CysTrp: 0.351 ± 0.0
0.351CysTyr: 0.351 ± 0.0
0.0CysXaa: 0.0 ± 0.0
Asp
3.512AspAla: 3.512 ± 0.0
1.405AspCys: 1.405 ± 0.0
3.161AspAsp: 3.161 ± 0.0
3.864AspGlu: 3.864 ± 0.0
4.215AspPhe: 4.215 ± 0.0
2.459AspGly: 2.459 ± 0.0
2.107AspHis: 2.107 ± 0.0
3.864AspIle: 3.864 ± 0.0
3.161AspLys: 3.161 ± 0.0
5.62AspLeu: 5.62 ± 0.0
1.405AspMet: 1.405 ± 0.0
4.566AspAsn: 4.566 ± 0.0
3.512AspPro: 3.512 ± 0.0
1.405AspGln: 1.405 ± 0.0
2.81AspArg: 2.81 ± 0.0
4.215AspSer: 4.215 ± 0.0
1.405AspThr: 1.405 ± 0.0
4.917AspVal: 4.917 ± 0.0
2.81AspTrp: 2.81 ± 0.0
1.054AspTyr: 1.054 ± 0.0
0.0AspXaa: 0.0 ± 0.0
Glu
4.566GluAla: 4.566 ± 0.0
0.0GluCys: 0.0 ± 0.0
2.81GluAsp: 2.81 ± 0.0
2.459GluGlu: 2.459 ± 0.0
3.512GluPhe: 3.512 ± 0.0
3.161GluGly: 3.161 ± 0.0
2.459GluHis: 2.459 ± 0.0
1.756GluIle: 1.756 ± 0.0
4.566GluLys: 4.566 ± 0.0
4.215GluLeu: 4.215 ± 0.0
1.405GluMet: 1.405 ± 0.0
2.81GluAsn: 2.81 ± 0.0
1.405GluPro: 1.405 ± 0.0
3.161GluGln: 3.161 ± 0.0
2.81GluArg: 2.81 ± 0.0
3.864GluSer: 3.864 ± 0.0
3.161GluThr: 3.161 ± 0.0
3.161GluVal: 3.161 ± 0.0
1.054GluTrp: 1.054 ± 0.0
2.107GluTyr: 2.107 ± 0.0
0.0GluXaa: 0.0 ± 0.0
Phe
4.917PheAla: 4.917 ± 0.0
0.0PheCys: 0.0 ± 0.0
2.107PheAsp: 2.107 ± 0.0
3.161PheGlu: 3.161 ± 0.0
0.702PhePhe: 0.702 ± 0.0
5.62PheGly: 5.62 ± 0.0
1.756PheHis: 1.756 ± 0.0
2.459PheIle: 2.459 ± 0.0
4.917PheLys: 4.917 ± 0.0
3.864PheLeu: 3.864 ± 0.0
0.702PheMet: 0.702 ± 0.0
1.756PheAsn: 1.756 ± 0.0
2.459PhePro: 2.459 ± 0.0
0.702PheGln: 0.702 ± 0.0
2.459PheArg: 2.459 ± 0.0
4.566PheSer: 4.566 ± 0.0
2.107PheThr: 2.107 ± 0.0
3.161PheVal: 3.161 ± 0.0
1.756PheTrp: 1.756 ± 0.0
1.054PheTyr: 1.054 ± 0.0
0.0PheXaa: 0.0 ± 0.0
Gly
3.864GlyAla: 3.864 ± 0.0
0.702GlyCys: 0.702 ± 0.0
3.864GlyAsp: 3.864 ± 0.0
3.512GlyGlu: 3.512 ± 0.0
3.864GlyPhe: 3.864 ± 0.0
4.215GlyGly: 4.215 ± 0.0
1.756GlyHis: 1.756 ± 0.0
2.107GlyIle: 2.107 ± 0.0
3.864GlyLys: 3.864 ± 0.0
4.917GlyLeu: 4.917 ± 0.0
1.405GlyMet: 1.405 ± 0.0
3.864GlyAsn: 3.864 ± 0.0
2.81GlyPro: 2.81 ± 0.0
4.215GlyGln: 4.215 ± 0.0
4.917GlyArg: 4.917 ± 0.0
5.62GlySer: 5.62 ± 0.0
4.566GlyThr: 4.566 ± 0.0
4.566GlyVal: 4.566 ± 0.0
2.459GlyTrp: 2.459 ± 0.0
3.161GlyTyr: 3.161 ± 0.0
0.0GlyXaa: 0.0 ± 0.0
His
2.459HisAla: 2.459 ± 0.0
1.054HisCys: 1.054 ± 0.0
1.756HisAsp: 1.756 ± 0.0
1.756HisGlu: 1.756 ± 0.0
1.054HisPhe: 1.054 ± 0.0
1.756HisGly: 1.756 ± 0.0
1.054HisHis: 1.054 ± 0.0
0.702HisIle: 0.702 ± 0.0
1.405HisLys: 1.405 ± 0.0
4.917HisLeu: 4.917 ± 0.0
0.351HisMet: 0.351 ± 0.0
0.351HisAsn: 0.351 ± 0.0
1.405HisPro: 1.405 ± 0.0
0.702HisGln: 0.702 ± 0.0
0.351HisArg: 0.351 ± 0.0
1.054HisSer: 1.054 ± 0.0
1.054HisThr: 1.054 ± 0.0
0.702HisVal: 0.702 ± 0.0
0.351HisTrp: 0.351 ± 0.0
1.756HisTyr: 1.756 ± 0.0
0.0HisXaa: 0.0 ± 0.0
Ile
3.512IleAla: 3.512 ± 0.0
1.054IleCys: 1.054 ± 0.0
4.215IleAsp: 4.215 ± 0.0
4.215IleGlu: 4.215 ± 0.0
0.351IlePhe: 0.351 ± 0.0
3.512IleGly: 3.512 ± 0.0
1.054IleHis: 1.054 ± 0.0
2.459IleIle: 2.459 ± 0.0
3.512IleLys: 3.512 ± 0.0
3.161IleLeu: 3.161 ± 0.0
1.054IleMet: 1.054 ± 0.0
2.107IleAsn: 2.107 ± 0.0
2.81IlePro: 2.81 ± 0.0
0.0IleGln: 0.0 ± 0.0
2.81IleArg: 2.81 ± 0.0
2.459IleSer: 2.459 ± 0.0
1.756IleThr: 1.756 ± 0.0
3.161IleVal: 3.161 ± 0.0
0.351IleTrp: 0.351 ± 0.0
1.756IleTyr: 1.756 ± 0.0
0.0IleXaa: 0.0 ± 0.0
Lys
2.81LysAla: 2.81 ± 0.0
1.405LysCys: 1.405 ± 0.0
4.917LysAsp: 4.917 ± 0.0
0.702LysGlu: 0.702 ± 0.0
4.566LysPhe: 4.566 ± 0.0
3.512LysGly: 3.512 ± 0.0
0.351LysHis: 0.351 ± 0.0
0.702LysIle: 0.702 ± 0.0
5.971LysLys: 5.971 ± 0.0
3.864LysLeu: 3.864 ± 0.0
2.107LysMet: 2.107 ± 0.0
2.81LysAsn: 2.81 ± 0.0
4.215LysPro: 4.215 ± 0.0
3.512LysGln: 3.512 ± 0.0
3.864LysArg: 3.864 ± 0.0
2.459LysSer: 2.459 ± 0.0
2.107LysThr: 2.107 ± 0.0
5.971LysVal: 5.971 ± 0.0
2.459LysTrp: 2.459 ± 0.0
3.161LysTyr: 3.161 ± 0.0
0.0LysXaa: 0.0 ± 0.0
Leu
4.215LeuAla: 4.215 ± 0.0
1.054LeuCys: 1.054 ± 0.0
7.727LeuAsp: 7.727 ± 0.0
5.269LeuGlu: 5.269 ± 0.0
4.917LeuPhe: 4.917 ± 0.0
5.62LeuGly: 5.62 ± 0.0
1.405LeuHis: 1.405 ± 0.0
4.566LeuIle: 4.566 ± 0.0
6.322LeuLys: 6.322 ± 0.0
7.376LeuLeu: 7.376 ± 0.0
1.405LeuMet: 1.405 ± 0.0
3.161LeuAsn: 3.161 ± 0.0
4.917LeuPro: 4.917 ± 0.0
4.215LeuGln: 4.215 ± 0.0
5.269LeuArg: 5.269 ± 0.0
8.43LeuSer: 8.43 ± 0.0
6.322LeuThr: 6.322 ± 0.0
4.917LeuVal: 4.917 ± 0.0
1.405LeuTrp: 1.405 ± 0.0
3.864LeuTyr: 3.864 ± 0.0
0.0LeuXaa: 0.0 ± 0.0
Met
1.756MetAla: 1.756 ± 0.0
0.0MetCys: 0.0 ± 0.0
2.107MetAsp: 2.107 ± 0.0
1.054MetGlu: 1.054 ± 0.0
0.351MetPhe: 0.351 ± 0.0
1.054MetGly: 1.054 ± 0.0
0.702MetHis: 0.702 ± 0.0
0.702MetIle: 0.702 ± 0.0
0.702MetLys: 0.702 ± 0.0
2.459MetLeu: 2.459 ± 0.0
0.351MetMet: 0.351 ± 0.0
0.702MetAsn: 0.702 ± 0.0
1.405MetPro: 1.405 ± 0.0
0.0MetGln: 0.0 ± 0.0
2.107MetArg: 2.107 ± 0.0
1.756MetSer: 1.756 ± 0.0
1.756MetThr: 1.756 ± 0.0
0.702MetVal: 0.702 ± 0.0
0.0MetTrp: 0.0 ± 0.0
0.351MetTyr: 0.351 ± 0.0
0.0MetXaa: 0.0 ± 0.0
Asn
1.405AsnAla: 1.405 ± 0.0
1.054AsnCys: 1.054 ± 0.0
0.702AsnAsp: 0.702 ± 0.0
1.054AsnGlu: 1.054 ± 0.0
2.459AsnPhe: 2.459 ± 0.0
3.161AsnGly: 3.161 ± 0.0
1.405AsnHis: 1.405 ± 0.0
1.756AsnIle: 1.756 ± 0.0
2.107AsnLys: 2.107 ± 0.0
3.864AsnLeu: 3.864 ± 0.0
1.054AsnMet: 1.054 ± 0.0
2.81AsnAsn: 2.81 ± 0.0
2.107AsnPro: 2.107 ± 0.0
0.702AsnGln: 0.702 ± 0.0
1.756AsnArg: 1.756 ± 0.0
2.81AsnSer: 2.81 ± 0.0
2.459AsnThr: 2.459 ± 0.0
3.161AsnVal: 3.161 ± 0.0
1.054AsnTrp: 1.054 ± 0.0
1.756AsnTyr: 1.756 ± 0.0
0.0AsnXaa: 0.0 ± 0.0
Pro
0.702ProAla: 0.702 ± 0.0
1.054ProCys: 1.054 ± 0.0
3.161ProAsp: 3.161 ± 0.0
3.512ProGlu: 3.512 ± 0.0
2.81ProPhe: 2.81 ± 0.0
4.917ProGly: 4.917 ± 0.0
1.054ProHis: 1.054 ± 0.0
2.459ProIle: 2.459 ± 0.0
2.459ProLys: 2.459 ± 0.0
3.512ProLeu: 3.512 ± 0.0
1.405ProMet: 1.405 ± 0.0
1.054ProAsn: 1.054 ± 0.0
2.107ProPro: 2.107 ± 0.0
3.512ProGln: 3.512 ± 0.0
2.81ProArg: 2.81 ± 0.0
3.864ProSer: 3.864 ± 0.0
2.81ProThr: 2.81 ± 0.0
3.864ProVal: 3.864 ± 0.0
1.054ProTrp: 1.054 ± 0.0
2.459ProTyr: 2.459 ± 0.0
0.0ProXaa: 0.0 ± 0.0
Gln
2.459GlnAla: 2.459 ± 0.0
1.054GlnCys: 1.054 ± 0.0
2.459GlnAsp: 2.459 ± 0.0
2.107GlnGlu: 2.107 ± 0.0
0.702GlnPhe: 0.702 ± 0.0
2.81GlnGly: 2.81 ± 0.0
1.054GlnHis: 1.054 ± 0.0
3.512GlnIle: 3.512 ± 0.0
1.405GlnLys: 1.405 ± 0.0
4.215GlnLeu: 4.215 ± 0.0
0.351GlnMet: 0.351 ± 0.0
0.0GlnAsn: 0.0 ± 0.0
1.054GlnPro: 1.054 ± 0.0
1.054GlnGln: 1.054 ± 0.0
3.161GlnArg: 3.161 ± 0.0
2.459GlnSer: 2.459 ± 0.0
2.459GlnThr: 2.459 ± 0.0
2.459GlnVal: 2.459 ± 0.0
0.702GlnTrp: 0.702 ± 0.0
1.405GlnTyr: 1.405 ± 0.0
0.0GlnXaa: 0.0 ± 0.0
Arg
2.81ArgAla: 2.81 ± 0.0
1.405ArgCys: 1.405 ± 0.0
2.459ArgAsp: 2.459 ± 0.0
2.459ArgGlu: 2.459 ± 0.0
2.81ArgPhe: 2.81 ± 0.0
2.81ArgGly: 2.81 ± 0.0
2.107ArgHis: 2.107 ± 0.0
2.81ArgIle: 2.81 ± 0.0
4.215ArgLys: 4.215 ± 0.0
8.43ArgLeu: 8.43 ± 0.0
0.351ArgMet: 0.351 ± 0.0
2.459ArgAsn: 2.459 ± 0.0
3.161ArgPro: 3.161 ± 0.0
2.107ArgGln: 2.107 ± 0.0
4.566ArgArg: 4.566 ± 0.0
3.512ArgSer: 3.512 ± 0.0
2.81ArgThr: 2.81 ± 0.0
4.215ArgVal: 4.215 ± 0.0
1.756ArgTrp: 1.756 ± 0.0
2.107ArgTyr: 2.107 ± 0.0
0.0ArgXaa: 0.0 ± 0.0
Ser
3.864SerAla: 3.864 ± 0.0
1.054SerCys: 1.054 ± 0.0
4.917SerAsp: 4.917 ± 0.0
2.81SerGlu: 2.81 ± 0.0
5.269SerPhe: 5.269 ± 0.0
7.025SerGly: 7.025 ± 0.0
2.459SerHis: 2.459 ± 0.0
4.566SerIle: 4.566 ± 0.0
3.161SerLys: 3.161 ± 0.0
5.971SerLeu: 5.971 ± 0.0
0.702SerMet: 0.702 ± 0.0
1.405SerAsn: 1.405 ± 0.0
4.566SerPro: 4.566 ± 0.0
1.756SerGln: 1.756 ± 0.0
3.864SerArg: 3.864 ± 0.0
4.215SerSer: 4.215 ± 0.0
4.917SerThr: 4.917 ± 0.0
4.566SerVal: 4.566 ± 0.0
1.756SerTrp: 1.756 ± 0.0
1.054SerTyr: 1.054 ± 0.0
0.0SerXaa: 0.0 ± 0.0
Thr
8.079ThrAla: 8.079 ± 0.0
1.054ThrCys: 1.054 ± 0.0
3.161ThrAsp: 3.161 ± 0.0
2.459ThrGlu: 2.459 ± 0.0
2.459ThrPhe: 2.459 ± 0.0
4.566ThrGly: 4.566 ± 0.0
1.756ThrHis: 1.756 ± 0.0
2.107ThrIle: 2.107 ± 0.0
2.81ThrLys: 2.81 ± 0.0
3.512ThrLeu: 3.512 ± 0.0
0.0ThrMet: 0.0 ± 0.0
1.756ThrAsn: 1.756 ± 0.0
3.512ThrPro: 3.512 ± 0.0
0.702ThrGln: 0.702 ± 0.0
4.215ThrArg: 4.215 ± 0.0
3.864ThrSer: 3.864 ± 0.0
3.161ThrThr: 3.161 ± 0.0
3.864ThrVal: 3.864 ± 0.0
0.0ThrTrp: 0.0 ± 0.0
2.459ThrTyr: 2.459 ± 0.0
0.0ThrXaa: 0.0 ± 0.0
Val
3.161ValAla: 3.161 ± 0.0
1.756ValCys: 1.756 ± 0.0
5.269ValAsp: 5.269 ± 0.0
3.512ValGlu: 3.512 ± 0.0
2.81ValPhe: 2.81 ± 0.0
5.62ValGly: 5.62 ± 0.0
1.405ValHis: 1.405 ± 0.0
3.864ValIle: 3.864 ± 0.0
4.215ValLys: 4.215 ± 0.0
7.376ValLeu: 7.376 ± 0.0
1.405ValMet: 1.405 ± 0.0
2.81ValAsn: 2.81 ± 0.0
4.566ValPro: 4.566 ± 0.0
1.405ValGln: 1.405 ± 0.0
4.917ValArg: 4.917 ± 0.0
4.917ValSer: 4.917 ± 0.0
4.215ValThr: 4.215 ± 0.0
4.566ValVal: 4.566 ± 0.0
0.351ValTrp: 0.351 ± 0.0
0.702ValTyr: 0.702 ± 0.0
0.0ValXaa: 0.0 ± 0.0
Trp
1.405TrpAla: 1.405 ± 0.0
0.0TrpCys: 0.0 ± 0.0
1.756TrpAsp: 1.756 ± 0.0
2.107TrpGlu: 2.107 ± 0.0
0.702TrpPhe: 0.702 ± 0.0
0.0TrpGly: 0.0 ± 0.0
0.351TrpHis: 0.351 ± 0.0
0.702TrpIle: 0.702 ± 0.0
1.405TrpLys: 1.405 ± 0.0
3.512TrpLeu: 3.512 ± 0.0
0.351TrpMet: 0.351 ± 0.0
1.054TrpAsn: 1.054 ± 0.0
0.0TrpPro: 0.0 ± 0.0
0.702TrpGln: 0.702 ± 0.0
0.702TrpArg: 0.702 ± 0.0
2.459TrpSer: 2.459 ± 0.0
1.405TrpThr: 1.405 ± 0.0
2.459TrpVal: 2.459 ± 0.0
1.405TrpTrp: 1.405 ± 0.0
0.702TrpTyr: 0.702 ± 0.0
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.81TyrAla: 2.81 ± 0.0
0.351TyrCys: 0.351 ± 0.0
2.459TyrAsp: 2.459 ± 0.0
2.459TyrGlu: 2.459 ± 0.0
2.107TyrPhe: 2.107 ± 0.0
1.756TyrGly: 1.756 ± 0.0
0.351TyrHis: 0.351 ± 0.0
2.107TyrIle: 2.107 ± 0.0
1.756TyrLys: 1.756 ± 0.0
4.566TyrLeu: 4.566 ± 0.0
0.702TyrMet: 0.702 ± 0.0
0.702TyrAsn: 0.702 ± 0.0
1.054TyrPro: 1.054 ± 0.0
1.405TyrGln: 1.405 ± 0.0
2.107TyrArg: 2.107 ± 0.0
2.459TyrSer: 2.459 ± 0.0
2.107TyrThr: 2.107 ± 0.0
1.756TyrVal: 1.756 ± 0.0
0.351TyrTrp: 0.351 ± 0.0
1.756TyrTyr: 1.756 ± 0.0
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 1 proteins (2848 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski