Nannocystis exedens

Taxonomy: cellular organisms; Bacteria; Proteobacteria; delta/epsilon subdivisions; Deltaproteobacteria; Myxococcales; Nannocystineae; Nannocystaceae; Nannocystis

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9143 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1I2FED5|A0A1I2FED5_9DELT NAD-dependent protein deacetylase SIR2 family OS=Nannocystis exedens OX=54 GN=SAMN02745121_06555 PE=4 SV=1
MM1 pKa = 8.0RR2 pKa = 11.84SRR4 pKa = 11.84ISNHH8 pKa = 5.46GPGFRR13 pKa = 11.84SFTTTSTIVAAFAAFAPEE31 pKa = 3.8AHH33 pKa = 7.21ADD35 pKa = 3.68PTRR38 pKa = 11.84LWGTYY43 pKa = 10.09DD44 pKa = 3.48GGSGTDD50 pKa = 2.87AGRR53 pKa = 11.84GVVIDD58 pKa = 4.56DD59 pKa = 4.17EE60 pKa = 5.23FNVVCVGEE68 pKa = 4.56TTSEE72 pKa = 3.86TGITADD78 pKa = 3.6AAHH81 pKa = 7.08DD82 pKa = 3.65GDD84 pKa = 4.6YY85 pKa = 11.45NGGRR89 pKa = 11.84DD90 pKa = 3.55AFITKK95 pKa = 9.93FDD97 pKa = 3.56WFGQQIWGNYY107 pKa = 7.98YY108 pKa = 10.5GGSGDD113 pKa = 5.79DD114 pKa = 3.32IFHH117 pKa = 7.26DD118 pKa = 4.13VVFDD122 pKa = 3.69EE123 pKa = 5.45AEE125 pKa = 4.09GTFFAGGATRR135 pKa = 11.84SANTGNVIATTGTHH149 pKa = 4.59QTALDD154 pKa = 3.87GTGDD158 pKa = 3.33AMLVKK163 pKa = 10.33FRR165 pKa = 11.84NNGARR170 pKa = 11.84LWGTYY175 pKa = 10.08FGGDD179 pKa = 3.31QLEE182 pKa = 4.37EE183 pKa = 4.03AFATCIDD190 pKa = 3.89SQGDD194 pKa = 3.86VYY196 pKa = 11.03IVGTTTSEE204 pKa = 4.0GLFDD208 pKa = 3.88GMVGFTPWDD217 pKa = 3.86DD218 pKa = 4.07EE219 pKa = 4.58LDD221 pKa = 3.71GSIDD225 pKa = 3.42AFIAKK230 pKa = 9.91FDD232 pKa = 3.97GTGGTLLWGTYY243 pKa = 9.56YY244 pKa = 10.73GGSGGEE250 pKa = 4.3TKK252 pKa = 10.76ALDD255 pKa = 3.86CAVGSDD261 pKa = 3.39DD262 pKa = 3.63AVYY265 pKa = 9.15VTGHH269 pKa = 4.98TTSANNEE276 pKa = 3.98LDD278 pKa = 3.32GSHH281 pKa = 7.17FDD283 pKa = 4.04TYY285 pKa = 11.69GGMQDD290 pKa = 3.54AFLVRR295 pKa = 11.84YY296 pKa = 9.38DD297 pKa = 3.54SSGVLEE303 pKa = 3.97WATYY307 pKa = 10.44YY308 pKa = 11.36GDD310 pKa = 3.64TGTDD314 pKa = 3.1QARR317 pKa = 11.84GVAVDD322 pKa = 3.59VSGTDD327 pKa = 3.29DD328 pKa = 3.36LVYY331 pKa = 10.48IVGLTDD337 pKa = 3.39SDD339 pKa = 3.32NDD341 pKa = 3.35IAVNSTTLRR350 pKa = 11.84AGSTDD355 pKa = 3.22AFITQFDD362 pKa = 3.74VDD364 pKa = 5.48GDD366 pKa = 4.32ILWGRR371 pKa = 11.84YY372 pKa = 8.4YY373 pKa = 11.03GGAGLDD379 pKa = 3.37QFEE382 pKa = 4.46GVSAEE387 pKa = 4.11GVIQASGATSSSGLFTSGFDD407 pKa = 3.3NAYY410 pKa = 10.83SGFGWDD416 pKa = 3.52GMFVTFDD423 pKa = 3.68ANGTAVWGSYY433 pKa = 10.39NGGDD437 pKa = 3.64GLDD440 pKa = 3.5EE441 pKa = 4.19SVIAVDD447 pKa = 3.84RR448 pKa = 11.84RR449 pKa = 11.84YY450 pKa = 9.43DD451 pKa = 3.46TLVGVGSTTSTSNTGINDD469 pKa = 3.69SNSPGTIHH477 pKa = 7.8DD478 pKa = 3.49PTYY481 pKa = 11.08NGDD484 pKa = 3.37YY485 pKa = 10.46DD486 pKa = 3.96IFMTLIRR493 pKa = 11.84LFSTT497 pKa = 4.16

Molecular weight: 52.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1I2GC44|A0A1I2GC44_9DELT Undecaprenyl-diphosphatase OS=Nannocystis exedens OX=54 GN=uppP PE=3 SV=1
MM1 pKa = 7.59ARR3 pKa = 11.84PSATPRR9 pKa = 11.84SRR11 pKa = 11.84ILAHH15 pKa = 6.27PRR17 pKa = 11.84RR18 pKa = 11.84ATWMVSRR25 pKa = 11.84WRR27 pKa = 11.84CFSSIARR34 pKa = 11.84ASGNSSRR41 pKa = 11.84GPTHH45 pKa = 6.79HH46 pKa = 7.01VRR48 pKa = 11.84LATPWSLIASIARR61 pKa = 11.84NSLAQPRR68 pKa = 11.84HH69 pKa = 4.74VRR71 pKa = 11.84LATTAVASASIARR84 pKa = 11.84RR85 pKa = 11.84TRR87 pKa = 11.84AVLSS91 pKa = 3.74

Molecular weight: 9.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9143

0

9143

3282201

39

4182

359.0

38.56

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.677 ± 0.045

1.383 ± 0.017

6.225 ± 0.022

6.022 ± 0.023

3.099 ± 0.015

9.029 ± 0.034

2.17 ± 0.013

3.351 ± 0.016

2.229 ± 0.022

10.406 ± 0.033

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.68 ± 0.01

1.824 ± 0.014

6.556 ± 0.03

2.934 ± 0.014

8.045 ± 0.037

4.954 ± 0.018

5.399 ± 0.026

7.632 ± 0.022

1.423 ± 0.01

1.961 ± 0.013
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski