Capybara microvirus Cap1_SP_141

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5E7|A0A4P8W5E7_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_141 OX=2585387 PE=4 SV=1
MM1 pKa = 7.52IKK3 pKa = 10.17SIYY6 pKa = 9.48CIRR9 pKa = 11.84DD10 pKa = 3.23VAIGYY15 pKa = 8.38CDD17 pKa = 4.02PFCALNDD24 pKa = 3.57KK25 pKa = 10.61VAIRR29 pKa = 11.84DD30 pKa = 3.45FRR32 pKa = 11.84NAINLPNTPYY42 pKa = 11.17NLNPKK47 pKa = 10.02DD48 pKa = 3.93YY49 pKa = 11.32DD50 pKa = 4.05LMCVASIDD58 pKa = 4.15LDD60 pKa = 3.79SGTVVAQQPQLVVSGISLVGVNNDD84 pKa = 2.97

Molecular weight: 9.19 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7Y7|A0A4P8W7Y7_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_141 OX=2585387 PE=4 SV=1
MM1 pKa = 7.07CTSPKK6 pKa = 10.24KK7 pKa = 10.34AFCVGLTKK15 pKa = 10.51NGKK18 pKa = 7.75PDD20 pKa = 3.69YY21 pKa = 10.98VIAPYY26 pKa = 9.9QCHH29 pKa = 5.48HH30 pKa = 6.1VEE32 pKa = 4.25KK33 pKa = 10.51IGDD36 pKa = 3.59KK37 pKa = 10.53FEE39 pKa = 4.45RR40 pKa = 11.84VYY42 pKa = 11.2SSAMSPRR49 pKa = 11.84ADD51 pKa = 2.92LVVSTFIEE59 pKa = 4.79IPCGRR64 pKa = 11.84CLDD67 pKa = 3.88CRR69 pKa = 11.84LSYY72 pKa = 10.57SRR74 pKa = 11.84SWADD78 pKa = 3.39RR79 pKa = 11.84LVRR82 pKa = 11.84EE83 pKa = 4.64SKK85 pKa = 9.91TSVSSLFVTFTYY97 pKa = 10.96DD98 pKa = 4.22DD99 pKa = 3.6DD100 pKa = 4.06HH101 pKa = 8.45LPYY104 pKa = 9.98HH105 pKa = 7.36DD106 pKa = 4.49YY107 pKa = 11.52VNSEE111 pKa = 3.96SGEE114 pKa = 4.2LVSKK118 pKa = 10.14PCLVKK123 pKa = 10.33KK124 pKa = 9.89HH125 pKa = 6.11CQDD128 pKa = 2.89FFKK131 pKa = 10.81RR132 pKa = 11.84LRR134 pKa = 11.84KK135 pKa = 10.2YY136 pKa = 10.56FDD138 pKa = 4.02GYY140 pKa = 10.05NIRR143 pKa = 11.84YY144 pKa = 8.77FIAGEE149 pKa = 4.01YY150 pKa = 10.57GEE152 pKa = 4.63TSARR156 pKa = 11.84PHH158 pKa = 4.91YY159 pKa = 10.42HH160 pKa = 5.58AVIYY164 pKa = 9.32NLPLDD169 pKa = 4.07KK170 pKa = 11.05LDD172 pKa = 3.53LQFYY176 pKa = 7.8KK177 pKa = 10.98TNFNGDD183 pKa = 3.75LYY185 pKa = 9.39YY186 pKa = 10.47TSPVLEE192 pKa = 4.93SIWTHH197 pKa = 5.76GYY199 pKa = 9.81VVLSDD204 pKa = 4.71FSWQTGAYY212 pKa = 5.63TARR215 pKa = 11.84YY216 pKa = 8.46ILKK219 pKa = 9.72KK220 pKa = 10.52QFGKK224 pKa = 10.76ASDD227 pKa = 3.65QFKK230 pKa = 9.69LTGFPQEE237 pKa = 3.96FVLMSRR243 pKa = 11.84KK244 pKa = 9.48PGLGRR249 pKa = 11.84QYY251 pKa = 11.04FNEE254 pKa = 4.58NIDD257 pKa = 4.71DD258 pKa = 5.19LIAYY262 pKa = 9.61DD263 pKa = 5.12GDD265 pKa = 3.47ICRR268 pKa = 11.84PGQKK272 pKa = 9.64SKK274 pKa = 10.42PGRR277 pKa = 11.84YY278 pKa = 8.72FDD280 pKa = 5.41SLIEE284 pKa = 4.47DD285 pKa = 4.68ADD287 pKa = 3.78PEE289 pKa = 4.41KK290 pKa = 11.41YY291 pKa = 10.07KK292 pKa = 10.66DD293 pKa = 3.72LKK295 pKa = 11.19NNRR298 pKa = 11.84QTVRR302 pKa = 11.84DD303 pKa = 3.61LFIAGKK309 pKa = 9.53LAQTDD314 pKa = 3.49KK315 pKa = 11.45SYY317 pKa = 11.9LDD319 pKa = 3.71LLSVEE324 pKa = 4.13DD325 pKa = 3.84HH326 pKa = 7.03YY327 pKa = 10.98YY328 pKa = 7.85TQRR331 pKa = 11.84ALHH334 pKa = 6.77LKK336 pKa = 10.51RR337 pKa = 11.84KK338 pKa = 9.85DD339 pKa = 3.31LL340 pKa = 4.04

Molecular weight: 39.49 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1362

84

558

272.4

30.3

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.461 ± 0.957

1.175 ± 0.601

6.902 ± 0.835

4.185 ± 0.742

4.993 ± 0.691

7.489 ± 1.054

1.762 ± 0.353

4.846 ± 0.624

5.507 ± 1.015

8.076 ± 0.494

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.129 ± 0.411

6.021 ± 0.811

5.36 ± 0.257

4.038 ± 0.542

3.818 ± 0.725

8.443 ± 1.235

5.8 ± 0.553

6.828 ± 0.689

1.101 ± 0.233

5.066 ± 0.711
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski