Desulfurobacterium indicum

Taxonomy: cellular organisms; Bacteria; Aquificae; Aquificae; Desulfurobacteriales; Desulfurobacteriaceae; Desulfurobacterium

Average proteome isoelectric point is 7.17

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1617 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1R1MJD2|A0A1R1MJD2_9BACT CitMHS domain-containing protein OS=Desulfurobacterium indicum OX=1914305 GN=BLW93_08200 PE=4 SV=1
MM1 pKa = 7.5WLVDD5 pKa = 3.91LSGSFGDD12 pKa = 6.48DD13 pKa = 3.22LFTWQNNTEE22 pKa = 4.42AIVNALKK29 pKa = 10.08TKK31 pKa = 10.5ISDD34 pKa = 3.64LRR36 pKa = 11.84VGLASFVDD44 pKa = 4.78APCSGFGYY52 pKa = 10.69DD53 pKa = 4.03GDD55 pKa = 3.9YY56 pKa = 11.02GYY58 pKa = 11.25KK59 pKa = 10.43LEE61 pKa = 5.06LGCVNNFVV69 pKa = 3.77

Molecular weight: 7.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1R1MMS6|A0A1R1MMS6_9BACT Ferredoxin-NADP reductase OS=Desulfurobacterium indicum OX=1914305 GN=BLW93_01710 PE=4 SV=1
MM1 pKa = 6.77YY2 pKa = 10.36KK3 pKa = 10.17KK4 pKa = 10.43VFSRR8 pKa = 11.84LFVAGILGMLVFLLWRR24 pKa = 11.84GINFTNAASFIYY36 pKa = 9.92GFFVIILDD44 pKa = 3.58FFIFARR50 pKa = 11.84FSSSLIMKK58 pKa = 10.21KK59 pKa = 10.0SFQRR63 pKa = 11.84SVTFGGMLLRR73 pKa = 11.84YY74 pKa = 8.95FIIFPLLYY82 pKa = 10.31LGIRR86 pKa = 11.84LAPNFMFAIISGAVWATFAFTITITTLLKK115 pKa = 10.53EE116 pKa = 3.95RR117 pKa = 11.84SGWSMEE123 pKa = 3.95EE124 pKa = 4.31HH125 pKa = 6.35NSSHH129 pKa = 6.11GRR131 pKa = 3.43

Molecular weight: 15.1 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1617

0

1617

494852

38

1482

306.0

34.52

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.519 ± 0.06

0.967 ± 0.027

4.798 ± 0.038

8.094 ± 0.084

5.224 ± 0.059

6.764 ± 0.051

1.518 ± 0.025

8.594 ± 0.062

9.375 ± 0.07

9.492 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.123 ± 0.025

4.08 ± 0.042

3.97 ± 0.036

1.981 ± 0.026

4.515 ± 0.047

5.495 ± 0.04

4.844 ± 0.038

7.364 ± 0.049

0.77 ± 0.018

3.512 ± 0.035
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski