Xanthophyllomyces dendrorhous virus L1A

Taxonomy: Viruses; Riboviria; Orthornavirae; Duplornaviricota; Chrymotiviricetes; Ghabrivirales; Totiviridae; Totivirus

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    

Protein with the lowest isoelectric point:
>tr|H9XW60|H9XW60_9VIRU RNA-directed RNA polymerase OS=Xanthophyllomyces dendrorhous virus L1A OX=1167690 GN=RdRp PE=3 SV=1
MM1 pKa = 6.6HH2 pKa = 7.25TKK4 pKa = 10.42FIEE7 pKa = 4.68SIVKK11 pKa = 9.02TDD13 pKa = 3.49YY14 pKa = 11.07EE15 pKa = 4.97GSFQPLFKK23 pKa = 10.6DD24 pKa = 4.44GRR26 pKa = 11.84FTLINKK32 pKa = 5.42QTAMVDD38 pKa = 3.28MLGRR42 pKa = 11.84QYY44 pKa = 11.6DD45 pKa = 4.03VNSEE49 pKa = 3.92LASNFNVCGKK59 pKa = 10.26KK60 pKa = 10.23PEE62 pKa = 4.03VLHH65 pKa = 6.37NVGEE69 pKa = 4.28ADD71 pKa = 3.91FSGLNRR77 pKa = 11.84KK78 pKa = 9.13YY79 pKa = 10.82FDD81 pKa = 3.85DD82 pKa = 3.97TNTYY86 pKa = 10.69SPLAAINEE94 pKa = 4.2FTKK97 pKa = 10.39FVPGVRR103 pKa = 11.84LTKK106 pKa = 10.93GEE108 pKa = 3.61VDD110 pKa = 4.29AFAKK114 pKa = 9.64SQIYY118 pKa = 10.15EE119 pKa = 4.26DD120 pKa = 3.74SQEE123 pKa = 4.29AYY125 pKa = 9.08ILNMLISWFKK135 pKa = 10.75ALLYY139 pKa = 10.68EE140 pKa = 4.57DD141 pKa = 4.79TNSKK145 pKa = 11.34DD146 pKa = 3.37NVLHH150 pKa = 5.94VKK152 pKa = 10.26QSGYY156 pKa = 10.29QDD158 pKa = 3.14SHH160 pKa = 7.41VKK162 pKa = 10.51AEE164 pKa = 4.15YY165 pKa = 10.75GGVTGDD171 pKa = 3.52VVHH174 pKa = 7.45EE175 pKa = 4.36INMGPPVDD183 pKa = 5.01DD184 pKa = 3.92MPEE187 pKa = 3.68VMMMVRR193 pKa = 11.84SKK195 pKa = 11.39DD196 pKa = 3.75NYY198 pKa = 7.82WDD200 pKa = 3.42RR201 pKa = 11.84PYY203 pKa = 11.51VLRR206 pKa = 11.84FDD208 pKa = 4.24NRR210 pKa = 11.84SSAQYY215 pKa = 9.53TFYY218 pKa = 9.79ITHH221 pKa = 6.56CFGRR225 pKa = 11.84DD226 pKa = 3.06GTSPLNVDD234 pKa = 2.68IHH236 pKa = 6.98IPSVDD241 pKa = 3.88FDD243 pKa = 3.74QMLFEE248 pKa = 4.74PASGAMRR255 pKa = 11.84SITDD259 pKa = 3.67PAALPWCKK267 pKa = 10.43SGTLFGWIKK276 pKa = 10.96DD277 pKa = 3.75YY278 pKa = 10.72VTLNRR283 pKa = 11.84VEE285 pKa = 4.42RR286 pKa = 11.84AFSAAFEE293 pKa = 4.3TLTAIAFTPMPSYY306 pKa = 10.77QEE308 pKa = 3.86SLVWDD313 pKa = 3.76KK314 pKa = 11.55AITQVVIAKK323 pKa = 7.73FAPCRR328 pKa = 11.84AKK330 pKa = 10.42IPSNLEE336 pKa = 3.47GEE338 pKa = 4.6AMVTDD343 pKa = 4.32MDD345 pKa = 3.62AHH347 pKa = 6.86DD348 pKa = 4.25FVLDD352 pKa = 3.57EE353 pKa = 4.47TKK355 pKa = 10.27TPRR358 pKa = 11.84KK359 pKa = 9.81ALFSGAMINYY369 pKa = 8.28LAFMGLHH376 pKa = 7.25AILSNYY382 pKa = 9.79ASRR385 pKa = 11.84HH386 pKa = 4.73EE387 pKa = 4.13NWRR390 pKa = 11.84SAFLHH395 pKa = 5.22SHH397 pKa = 6.33EE398 pKa = 4.77EE399 pKa = 3.74LAILHH404 pKa = 6.54DD405 pKa = 3.81RR406 pKa = 11.84TVRR409 pKa = 11.84AALTSVITGKK419 pKa = 10.85EE420 pKa = 3.78MVTFMNPNLFVSYY433 pKa = 10.77DD434 pKa = 3.55VTPMVNVSKK443 pKa = 11.19VSFEE447 pKa = 4.09EE448 pKa = 4.1VLEE451 pKa = 4.16RR452 pKa = 11.84GYY454 pKa = 10.17PSSLPVHH461 pKa = 6.27GVVPMVSGSLFLSANASDD479 pKa = 4.37VASQCHH485 pKa = 6.85LEE487 pKa = 4.07QGMKK491 pKa = 9.04VTVDD495 pKa = 3.26EE496 pKa = 4.75YY497 pKa = 11.04GTVSPEE503 pKa = 3.53DD504 pKa = 3.85ALRR507 pKa = 11.84VAQMYY512 pKa = 10.88RR513 pKa = 11.84MFGHH517 pKa = 6.19EE518 pKa = 4.12LEE520 pKa = 4.38IRR522 pKa = 11.84SEE524 pKa = 3.98KK525 pKa = 10.01TEE527 pKa = 4.36EE528 pKa = 3.69IHH530 pKa = 7.29EE531 pKa = 4.28LFAPVQEE538 pKa = 4.3CVIYY542 pKa = 9.85PSALLYY548 pKa = 8.17NTRR551 pKa = 11.84DD552 pKa = 3.34TDD554 pKa = 3.73RR555 pKa = 11.84LKK557 pKa = 11.0LVSSLRR563 pKa = 11.84RR564 pKa = 11.84PGRR567 pKa = 11.84SSTIPDD573 pKa = 3.48VSALTAGQTITIDD586 pKa = 3.38YY587 pKa = 7.12TIPRR591 pKa = 11.84IGMHH595 pKa = 5.85YY596 pKa = 9.88FNKK599 pKa = 9.87RR600 pKa = 11.84VLPIAPSMVLPQRR613 pKa = 11.84KK614 pKa = 8.71RR615 pKa = 11.84EE616 pKa = 3.52ITFRR620 pKa = 11.84VKK622 pKa = 10.49GHH624 pKa = 5.42TVLHH628 pKa = 5.54KK629 pKa = 11.2VKK631 pKa = 9.95MNASNVTRR639 pKa = 11.84PVKK642 pKa = 10.26DD643 pKa = 3.31FHH645 pKa = 8.44GGEE648 pKa = 4.05IQVAPLLPVLRR659 pKa = 11.84NARR662 pKa = 11.84VPIQVNQTSEE672 pKa = 4.1EE673 pKa = 4.33DD674 pKa = 3.45VTAEE678 pKa = 4.53DD679 pKa = 4.17VEE681 pKa = 4.46

Molecular weight:
76.65 kDa
Isoelectric point according different methods:






Protein with the highest isoelectric point:
>tr|H9XW60|H9XW60_9VIRU RNA-directed RNA polymerase OS=Xanthophyllomyces dendrorhous virus L1A OX=1167690 GN=RdRp PE=3 SV=1
MM1 pKa = 7.83DD2 pKa = 5.36RR3 pKa = 11.84EE4 pKa = 4.3SSNKK8 pKa = 9.75FGIFEE13 pKa = 4.27ASKK16 pKa = 10.31SVYY19 pKa = 9.35GVTMSGLVIANGKK32 pKa = 10.1AKK34 pKa = 10.47FFFASIKK41 pKa = 10.42QYY43 pKa = 11.63LLTQSKK49 pKa = 10.96AMLIAMTRR57 pKa = 11.84HH58 pKa = 5.62FSSLYY63 pKa = 10.08EE64 pKa = 4.1SYY66 pKa = 10.94AYY68 pKa = 9.96DD69 pKa = 4.92DD70 pKa = 3.63PTSPVNLFRR79 pKa = 11.84DD80 pKa = 4.26RR81 pKa = 11.84FPGRR85 pKa = 11.84SEE87 pKa = 3.9NEE89 pKa = 3.44AMTFKK94 pKa = 10.8QMEE97 pKa = 4.63EE98 pKa = 4.08LPKK101 pKa = 10.82SKK103 pKa = 10.27ISGAHH108 pKa = 6.2HH109 pKa = 6.14FHH111 pKa = 6.6FTPMQVLKK119 pKa = 10.88SIGRR123 pKa = 11.84GRR125 pKa = 11.84LEE127 pKa = 3.85RR128 pKa = 11.84AIQASRR134 pKa = 11.84LPKK137 pKa = 9.91DD138 pKa = 3.42AEE140 pKa = 4.25MTFATGMLLWYY151 pKa = 9.35TSISDD156 pKa = 3.87QMAEE160 pKa = 4.66LIRR163 pKa = 11.84GAGIFKK169 pKa = 10.01CDD171 pKa = 3.36SVRR174 pKa = 11.84EE175 pKa = 4.12YY176 pKa = 10.96VKK178 pKa = 10.57EE179 pKa = 3.9MKK181 pKa = 10.14QLSVEE186 pKa = 4.21AKK188 pKa = 9.82SLQNLVTDD196 pKa = 4.2DD197 pKa = 3.85LRR199 pKa = 11.84TVFEE203 pKa = 5.09LEE205 pKa = 4.12VLVNRR210 pKa = 11.84IDD212 pKa = 4.99GVVDD216 pKa = 3.21WEE218 pKa = 4.29KK219 pKa = 11.0EE220 pKa = 3.93KK221 pKa = 11.17EE222 pKa = 3.93NRR224 pKa = 11.84QSVNVTNIKK233 pKa = 10.73DD234 pKa = 3.44SDD236 pKa = 4.06VFRR239 pKa = 11.84SACKK243 pKa = 9.98IFEE246 pKa = 4.29DD247 pKa = 3.59AKK249 pKa = 11.17GIGRR253 pKa = 11.84RR254 pKa = 11.84PKK256 pKa = 8.95SFSWEE261 pKa = 4.31SYY263 pKa = 7.49WANRR267 pKa = 11.84WQWSAAGSIHH277 pKa = 5.62SQYY280 pKa = 9.7PRR282 pKa = 11.84DD283 pKa = 3.68MEE285 pKa = 4.27YY286 pKa = 10.8VIRR289 pKa = 11.84DD290 pKa = 3.57QQSLKK295 pKa = 11.0NKK297 pKa = 10.11FITISNMPKK306 pKa = 9.02CTVDD310 pKa = 3.33YY311 pKa = 10.82FSDD314 pKa = 4.49RR315 pKa = 11.84EE316 pKa = 4.11PQVQGWSSTKK326 pKa = 10.34YY327 pKa = 8.99EE328 pKa = 3.89WGKK331 pKa = 9.95QRR333 pKa = 11.84AIYY336 pKa = 8.53GTDD339 pKa = 2.92LTSYY343 pKa = 10.13VLSNFAFYY351 pKa = 10.89NCEE354 pKa = 3.76NVLPNQFPVGRR365 pKa = 11.84DD366 pKa = 3.35ANDD369 pKa = 3.18EE370 pKa = 4.19NVVNRR375 pKa = 11.84VSGVLNNRR383 pKa = 11.84MPFCLDD389 pKa = 3.3FEE391 pKa = 5.27DD392 pKa = 5.67FNSQHH397 pKa = 6.66SSGNMKK403 pKa = 10.31AVIYY407 pKa = 10.07AYY409 pKa = 9.49IEE411 pKa = 4.12TFIDD415 pKa = 3.98CLTPEE420 pKa = 4.15QEE422 pKa = 4.28QAAMWTAASLDD433 pKa = 3.61KK434 pKa = 11.09QIINDD439 pKa = 3.53NVGTKK444 pKa = 7.34TTYY447 pKa = 9.61EE448 pKa = 4.16SKK450 pKa = 9.96GTLLSGWRR458 pKa = 11.84LTTFMNSVLNYY469 pKa = 10.02IYY471 pKa = 7.55TTKK474 pKa = 10.69LAAEE478 pKa = 4.62EE479 pKa = 4.13KK480 pKa = 10.42RR481 pKa = 11.84PGDD484 pKa = 3.75SLHH487 pKa = 6.73NGDD490 pKa = 5.07DD491 pKa = 3.41VLIGVRR497 pKa = 11.84SMALPQRR504 pKa = 11.84CMQNAIKK511 pKa = 10.83YY512 pKa = 6.95NVRR515 pKa = 11.84MQSSKK520 pKa = 10.74CAVGAIAEE528 pKa = 4.3FLRR531 pKa = 11.84IDD533 pKa = 3.95HH534 pKa = 6.25KK535 pKa = 11.27QGGNGQYY542 pKa = 10.68LSRR545 pKa = 11.84AVATMVHH552 pKa = 5.78SRR554 pKa = 11.84IEE556 pKa = 4.29SRR558 pKa = 11.84VSTDD562 pKa = 2.8IRR564 pKa = 11.84DD565 pKa = 3.73LVQSMEE571 pKa = 4.09NRR573 pKa = 11.84FADD576 pKa = 3.42AKK578 pKa = 10.21GRR580 pKa = 11.84GMANDD585 pKa = 4.26IISGLRR591 pKa = 11.84EE592 pKa = 3.8QYY594 pKa = 11.27YY595 pKa = 8.9MRR597 pKa = 11.84QSVLCDD603 pKa = 3.13TDD605 pKa = 4.19VEE607 pKa = 4.65DD608 pKa = 5.77IYY610 pKa = 11.07LIKK613 pKa = 10.46NAHH616 pKa = 5.77RR617 pKa = 11.84VVGGISEE624 pKa = 4.29EE625 pKa = 4.34KK626 pKa = 9.6DD627 pKa = 3.09SKK629 pKa = 10.66MGVLITSQLRR639 pKa = 11.84AQKK642 pKa = 10.22NVSIPYY648 pKa = 9.59LPGVNEE654 pKa = 4.14YY655 pKa = 11.33ANEE658 pKa = 3.48IHH660 pKa = 7.09KK661 pKa = 10.42ALKK664 pKa = 10.21INVSIKK670 pKa = 8.99TICDD674 pKa = 3.11RR675 pKa = 11.84LYY677 pKa = 10.49DD678 pKa = 3.66ATYY681 pKa = 9.7EE682 pKa = 4.03AVSIKK687 pKa = 9.9DD688 pKa = 3.25RR689 pKa = 11.84KK690 pKa = 9.67MKK692 pKa = 10.12ILRR695 pKa = 11.84EE696 pKa = 3.97NRR698 pKa = 11.84DD699 pKa = 3.03QWFVNVRR706 pKa = 11.84RR707 pKa = 11.84IYY709 pKa = 9.94KK710 pKa = 9.23AHH712 pKa = 7.27KK713 pKa = 10.14GSQLSQNYY721 pKa = 8.66GKK723 pKa = 10.57AALVGFALEE732 pKa = 4.03VLGRR736 pKa = 11.84EE737 pKa = 4.3MPDD740 pKa = 2.98ATITTILNTSQRR752 pKa = 11.84PLDD755 pKa = 4.63LIKK758 pKa = 10.78HH759 pKa = 5.69ILL761 pKa = 3.48

Molecular weight:
86.69 kDa
Isoelectric point according different methods:






Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1442

681

761

721.0

81.67

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.074 ± 0.078

1.11 ± 0.147

5.895 ± 0.081

6.103 ± 0.136

4.508 ± 0.311

5.27 ± 0.178

2.358 ± 0.466

5.687 ± 0.54

5.756 ± 0.584

7.42 ± 0.138

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.675 ± 0.091

4.993 ± 0.377

3.883 ± 0.901

3.814 ± 0.563

5.825 ± 0.44

8.044 ± 0.357

5.617 ± 0.447

7.906 ± 0.864

1.179 ± 0.191

3.883 ± 0.136

Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski