Hop latent virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Carlavirus

Average proteome isoelectric point is 7.01

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q9E9R6|Q9E9R6_9VIRU Helicase OS=Hop latent virus OX=104263 GN=ORF 1 PE=2 SV=1
MM1 pKa = 7.86DD2 pKa = 3.94VLVDD6 pKa = 4.35LLHH9 pKa = 6.65KK10 pKa = 10.75FGFEE14 pKa = 3.96RR15 pKa = 11.84LSSRR19 pKa = 11.84LTTPIVVHH27 pKa = 6.13CVPGAGKK34 pKa = 8.46STLIRR39 pKa = 11.84EE40 pKa = 4.43LLDD43 pKa = 3.98LDD45 pKa = 4.22TRR47 pKa = 11.84FCAYY51 pKa = 8.71TAGVPDD57 pKa = 3.87SPRR60 pKa = 11.84LNGRR64 pKa = 11.84WIRR67 pKa = 11.84ALEE70 pKa = 4.29EE71 pKa = 4.17YY72 pKa = 10.13PGTEE76 pKa = 3.54GRR78 pKa = 11.84LAIVDD83 pKa = 4.46EE84 pKa = 4.28YY85 pKa = 11.44TLLDD89 pKa = 4.03KK90 pKa = 11.46LPFEE94 pKa = 4.63PFAVFGDD101 pKa = 4.69PIQSNSKK108 pKa = 10.26GVLPAHH114 pKa = 6.18FTCNFSRR121 pKa = 11.84RR122 pKa = 11.84FGLATSNLLRR132 pKa = 11.84DD133 pKa = 4.13LGWNVIAEE141 pKa = 4.42GSDD144 pKa = 3.29VVQISDD150 pKa = 3.19IFGVEE155 pKa = 4.17PIGTVVYY162 pKa = 9.49FEE164 pKa = 5.38AEE166 pKa = 4.27VGCLLRR172 pKa = 11.84SHH174 pKa = 6.51CVEE177 pKa = 4.08AKK179 pKa = 10.09SLAEE183 pKa = 3.76IRR185 pKa = 11.84GQTFDD190 pKa = 2.77IVTFVTSEE198 pKa = 3.98NCPSSDD204 pKa = 2.85VCAAFQCLTRR214 pKa = 11.84HH215 pKa = 6.06RR216 pKa = 11.84EE217 pKa = 3.98ALHH220 pKa = 5.88ILCPNATYY228 pKa = 8.9TAAA231 pKa = 4.37

Molecular weight: 25.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q9E9R2|Q9E9R2_9VIRU Capsid protein OS=Hop latent virus OX=104263 GN=ORF 5 PE=2 SV=1
MM1 pKa = 7.5FYY3 pKa = 11.05LRR5 pKa = 11.84VALLLHH11 pKa = 6.31NKK13 pKa = 9.38FLEE16 pKa = 4.04QCGRR20 pKa = 11.84SDD22 pKa = 3.29FHH24 pKa = 8.21LCVMISLQVHH34 pKa = 5.73RR35 pKa = 11.84PVGVGRR41 pKa = 11.84SSYY44 pKa = 10.59ARR46 pKa = 11.84RR47 pKa = 11.84RR48 pKa = 11.84RR49 pKa = 11.84AKK51 pKa = 10.48LVGRR55 pKa = 11.84CHH57 pKa = 5.96RR58 pKa = 11.84CYY60 pKa = 10.69RR61 pKa = 11.84LWPPTAFTTRR71 pKa = 11.84CDD73 pKa = 3.54NKK75 pKa = 9.85TCFPGLTYY83 pKa = 10.4NASIARR89 pKa = 11.84FIRR92 pKa = 11.84DD93 pKa = 3.03GVTEE97 pKa = 4.74VIPSAPNN104 pKa = 3.05

Molecular weight: 11.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2790

60

1981

465.0

52.38

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.814 ± 0.43

2.903 ± 0.566

5.09 ± 0.671

6.703 ± 1.025

4.695 ± 0.829

6.093 ± 0.584

2.473 ± 0.42

4.194 ± 0.267

5.806 ± 1.055

11.075 ± 0.748

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.971 ± 0.419

3.943 ± 0.515

4.301 ± 0.791

3.011 ± 0.367

6.667 ± 0.726

6.953 ± 0.324

4.194 ± 0.624

7.563 ± 0.796

1.29 ± 0.128

3.262 ± 0.382
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski