Landjia virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Hapavirus; Landjia hapavirus

Average proteome isoelectric point is 6.91

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R1U5|A0A0D3R1U5_9RHAB Uncharacterized protein OS=Landjia virus OX=1272947 PE=4 SV=1
MM1 pKa = 7.16EE2 pKa = 4.69QEE4 pKa = 3.97QQINCPYY11 pKa = 10.89DD12 pKa = 3.28WDD14 pKa = 4.09AMSNSLKK21 pKa = 10.48QADD24 pKa = 3.9NEE26 pKa = 4.45EE27 pKa = 4.04EE28 pKa = 5.32DD29 pKa = 4.5EE30 pKa = 4.59LCTAPSKK37 pKa = 10.76PSILPTSDD45 pKa = 3.74SDD47 pKa = 3.42WAEE50 pKa = 3.96SVMSPQEE57 pKa = 3.92PCPEE61 pKa = 4.36KK62 pKa = 10.83EE63 pKa = 4.83DD64 pKa = 4.07DD65 pKa = 5.55QSDD68 pKa = 3.65DD69 pKa = 4.36DD70 pKa = 4.48YY71 pKa = 11.85NEE73 pKa = 3.99PVEE76 pKa = 4.48DD77 pKa = 3.88VRR79 pKa = 11.84SSLDD83 pKa = 3.53TLVHH87 pKa = 6.1VPDD90 pKa = 4.1HH91 pKa = 6.05LSIRR95 pKa = 11.84EE96 pKa = 3.93EE97 pKa = 3.76VRR99 pKa = 11.84LIGDD103 pKa = 4.07IQQLVYY109 pKa = 11.18VLTNGQKK116 pKa = 10.83KK117 pKa = 8.75MDD119 pKa = 3.49VMTKK123 pKa = 9.27EE124 pKa = 4.09GKK126 pKa = 10.21KK127 pKa = 9.88ILILNDD133 pKa = 2.81INTPSTKK140 pKa = 10.37SKK142 pKa = 10.51VPIRR146 pKa = 11.84KK147 pKa = 8.41EE148 pKa = 3.58RR149 pKa = 11.84ALDD152 pKa = 3.74DD153 pKa = 4.42AGCIHH158 pKa = 7.78LARR161 pKa = 11.84VVQDD165 pKa = 3.5LGKK168 pKa = 10.38GIKK171 pKa = 9.38VNKK174 pKa = 9.46ILGGVSTLTWRR185 pKa = 11.84SLLIDD190 pKa = 4.65PDD192 pKa = 5.33DD193 pKa = 4.01IDD195 pKa = 3.64RR196 pKa = 11.84SKK198 pKa = 11.25AYY200 pKa = 9.43TSAASAYY207 pKa = 9.34KK208 pKa = 10.3AIIKK212 pKa = 9.42LSPNYY217 pKa = 10.35SIIKK221 pKa = 9.87ARR223 pKa = 11.84YY224 pKa = 6.86KK225 pKa = 10.62CPYY228 pKa = 9.19

Molecular weight: 25.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1F1|A0A0D3R1F1_9RHAB Matrix OS=Landjia virus OX=1272947 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 10.54KK3 pKa = 10.44KK4 pKa = 9.62MNSVQHH10 pKa = 5.85HH11 pKa = 5.78RR12 pKa = 11.84NHH14 pKa = 6.55RR15 pKa = 11.84FFRR18 pKa = 11.84HH19 pKa = 5.49LTPIGQSLLCLHH31 pKa = 7.06RR32 pKa = 11.84NHH34 pKa = 6.46AQRR37 pKa = 11.84RR38 pKa = 11.84RR39 pKa = 11.84MISQMMITMNPWRR52 pKa = 11.84MLEE55 pKa = 3.99ALLTLWFMCLIIYY68 pKa = 9.09QLEE71 pKa = 4.31RR72 pKa = 11.84KK73 pKa = 9.65SDD75 pKa = 3.23

Molecular weight: 9.3 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11

0

11

4482

75

2109

407.5

46.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

3.771 ± 0.356

1.606 ± 0.178

5.756 ± 0.416

5.466 ± 0.274

4.306 ± 0.456

5.221 ± 0.295

2.923 ± 0.348

8.501 ± 0.412

6.961 ± 0.493

9.705 ± 0.932

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.633 ± 0.461

6.158 ± 0.38

4.395 ± 0.398

3.525 ± 0.252

4.462 ± 0.35

8.099 ± 0.442

4.953 ± 0.379

5.109 ± 0.26

2.164 ± 0.198

4.284 ± 0.404
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski