Amino acid dipepetide frequency for Fusarium graminearum mycovirus China 9

Apart from single amino acid frequencies one can also calculate so called amino acid dipeptide frequency.

There is 400 possibilites (441 if we consider Xaa as additional 21st amino acid representing all non-standard or unknown amino acids). Thus, if the dipeptides would be present randomly in proteins each amino acid dipeptide should be present with 0.25% frequency. As it is not the case in the nature, for better visablity all more than expected dipepetides are marked by red, and those which are underrepresented are marked by blue in the table.

All values are presented as per milles (‰), therefore need to be multiplied by 10-3.

For more information see sequence space article on Wikipedia.

AlaCysAspGluPheGlyHisIleLysLeuMetAsnProGlnArgSerThrValTrpTyrXaa
Ala
11.855AlaAla: 11.855 ± 0.977
1.537AlaCys: 1.537 ± 0.543
5.708AlaAsp: 5.708 ± 0.63
4.83AlaGlu: 4.83 ± 0.725
3.952AlaPhe: 3.952 ± 0.638
5.928AlaGly: 5.928 ± 1.169
3.074AlaHis: 3.074 ± 0.686
4.83AlaIle: 4.83 ± 0.469
3.074AlaLys: 3.074 ± 1.387
9.001AlaLeu: 9.001 ± 0.935
1.976AlaMet: 1.976 ± 0.326
3.952AlaAsn: 3.952 ± 0.787
4.391AlaPro: 4.391 ± 0.709
4.171AlaGln: 4.171 ± 0.73
6.367AlaArg: 6.367 ± 1.141
9.221AlaSer: 9.221 ± 0.92
5.928AlaThr: 5.928 ± 0.419
7.903AlaVal: 7.903 ± 0.924
1.537AlaTrp: 1.537 ± 0.458
2.854AlaTyr: 2.854 ± 0.767
0.0AlaXaa: 0.0 ± 0.0
Cys
1.976CysAla: 1.976 ± 0.626
0.439CysCys: 0.439 ± 0.239
1.098CysAsp: 1.098 ± 0.696
0.659CysGlu: 0.659 ± 0.362
0.439CysPhe: 0.439 ± 0.239
1.976CysGly: 1.976 ± 0.856
1.976CysHis: 1.976 ± 1.236
0.659CysIle: 0.659 ± 0.628
0.22CysLys: 0.22 ± 0.183
0.878CysLeu: 0.878 ± 0.575
0.439CysMet: 0.439 ± 0.419
0.659CysAsn: 0.659 ± 0.548
1.537CysPro: 1.537 ± 0.64
0.878CysGln: 0.878 ± 0.388
1.317CysArg: 1.317 ± 0.334
2.415CysSer: 2.415 ± 0.441
1.098CysThr: 1.098 ± 0.468
1.098CysVal: 1.098 ± 0.336
0.22CysTrp: 0.22 ± 0.174
0.22CysTyr: 0.22 ± 0.209
0.0CysXaa: 0.0 ± 0.0
Asp
5.708AspAla: 5.708 ± 0.628
1.098AspCys: 1.098 ± 0.258
5.488AspAsp: 5.488 ± 0.971
2.854AspGlu: 2.854 ± 0.772
1.098AspPhe: 1.098 ± 0.296
2.634AspGly: 2.634 ± 1.309
1.976AspHis: 1.976 ± 0.971
2.195AspIle: 2.195 ± 0.771
3.732AspLys: 3.732 ± 0.976
6.147AspLeu: 6.147 ± 0.641
1.976AspMet: 1.976 ± 0.916
1.756AspAsn: 1.756 ± 0.534
1.317AspPro: 1.317 ± 0.331
2.195AspGln: 2.195 ± 0.547
3.074AspArg: 3.074 ± 0.949
2.634AspSer: 2.634 ± 0.468
3.074AspThr: 3.074 ± 0.783
6.586AspVal: 6.586 ± 1.577
1.537AspTrp: 1.537 ± 0.633
2.415AspTyr: 2.415 ± 0.502
0.0AspXaa: 0.0 ± 0.0
Glu
4.61GluAla: 4.61 ± 0.722
0.659GluCys: 0.659 ± 0.628
2.634GluAsp: 2.634 ± 0.902
1.976GluGlu: 1.976 ± 0.87
2.195GluPhe: 2.195 ± 1.274
3.074GluGly: 3.074 ± 0.827
1.537GluHis: 1.537 ± 0.415
1.756GluIle: 1.756 ± 0.399
1.317GluLys: 1.317 ± 0.722
5.269GluLeu: 5.269 ± 0.958
0.878GluMet: 0.878 ± 0.388
1.976GluAsn: 1.976 ± 0.702
2.634GluPro: 2.634 ± 0.79
3.074GluGln: 3.074 ± 0.675
3.074GluArg: 3.074 ± 0.686
4.391GluSer: 4.391 ± 0.895
3.074GluThr: 3.074 ± 0.781
3.293GluVal: 3.293 ± 0.748
1.317GluTrp: 1.317 ± 0.293
2.415GluTyr: 2.415 ± 0.634
0.0GluXaa: 0.0 ± 0.0
Phe
3.293PheAla: 3.293 ± 1.06
0.22PheCys: 0.22 ± 0.209
1.537PheAsp: 1.537 ± 0.439
2.415PheGlu: 2.415 ± 0.644
1.317PhePhe: 1.317 ± 0.14
3.074PheGly: 3.074 ± 0.784
0.659PheHis: 0.659 ± 0.251
0.439PheIle: 0.439 ± 0.287
0.0PheLys: 0.0 ± 0.0
1.317PheLeu: 1.317 ± 0.553
0.659PheMet: 0.659 ± 0.231
1.317PheAsn: 1.317 ± 0.491
0.659PhePro: 0.659 ± 0.383
0.22PheGln: 0.22 ± 0.174
1.537PheArg: 1.537 ± 0.479
2.415PheSer: 2.415 ± 0.508
3.732PheThr: 3.732 ± 0.959
1.756PheVal: 1.756 ± 0.195
0.659PheTrp: 0.659 ± 0.376
0.659PheTyr: 0.659 ± 0.367
0.0PheXaa: 0.0 ± 0.0
Gly
4.83GlyAla: 4.83 ± 0.987
1.098GlyCys: 1.098 ± 0.913
3.074GlyAsp: 3.074 ± 0.656
3.952GlyGlu: 3.952 ± 0.462
1.098GlyPhe: 1.098 ± 0.397
5.269GlyGly: 5.269 ± 1.505
0.659GlyHis: 0.659 ± 0.404
2.854GlyIle: 2.854 ± 0.869
3.732GlyLys: 3.732 ± 0.929
5.269GlyLeu: 5.269 ± 0.836
0.878GlyMet: 0.878 ± 0.333
1.756GlyAsn: 1.756 ± 0.388
2.854GlyPro: 2.854 ± 0.771
3.732GlyGln: 3.732 ± 0.705
4.171GlyArg: 4.171 ± 0.946
3.513GlySer: 3.513 ± 0.787
5.928GlyThr: 5.928 ± 1.313
4.391GlyVal: 4.391 ± 1.042
0.878GlyTrp: 0.878 ± 0.333
2.634GlyTyr: 2.634 ± 0.43
0.0GlyXaa: 0.0 ± 0.0
His
2.634HisAla: 2.634 ± 0.374
1.537HisCys: 1.537 ± 1.108
2.195HisAsp: 2.195 ± 0.776
2.854HisGlu: 2.854 ± 1.363
0.659HisPhe: 0.659 ± 0.197
1.976HisGly: 1.976 ± 1.151
1.098HisHis: 1.098 ± 0.489
1.756HisIle: 1.756 ± 0.472
1.976HisLys: 1.976 ± 1.175
2.634HisLeu: 2.634 ± 0.953
0.659HisMet: 0.659 ± 0.374
1.537HisAsn: 1.537 ± 0.199
1.317HisPro: 1.317 ± 0.71
1.537HisGln: 1.537 ± 0.389
3.513HisArg: 3.513 ± 0.88
2.634HisSer: 2.634 ± 1.079
1.976HisThr: 1.976 ± 0.56
1.098HisVal: 1.098 ± 0.377
0.878HisTrp: 0.878 ± 0.184
1.756HisTyr: 1.756 ± 0.502
0.0HisXaa: 0.0 ± 0.0
Ile
3.952IleAla: 3.952 ± 0.623
0.878IleCys: 0.878 ± 0.329
1.756IleAsp: 1.756 ± 0.417
1.976IleGlu: 1.976 ± 0.654
0.0IlePhe: 0.0 ± 0.0
1.976IleGly: 1.976 ± 0.646
1.098IleHis: 1.098 ± 0.515
0.659IleIle: 0.659 ± 0.231
2.195IleLys: 2.195 ± 0.388
1.098IleLeu: 1.098 ± 0.366
0.878IleMet: 0.878 ± 0.442
2.634IleAsn: 2.634 ± 0.423
1.317IlePro: 1.317 ± 0.252
0.659IleGln: 0.659 ± 0.352
3.952IleArg: 3.952 ± 0.554
2.634IleSer: 2.634 ± 0.713
3.293IleThr: 3.293 ± 1.043
3.293IleVal: 3.293 ± 0.595
0.22IleTrp: 0.22 ± 0.209
0.659IleTyr: 0.659 ± 0.197
0.0IleXaa: 0.0 ± 0.0
Lys
4.171LysAla: 4.171 ± 0.588
1.317LysCys: 1.317 ± 0.66
1.976LysAsp: 1.976 ± 0.917
1.756LysGlu: 1.756 ± 0.676
1.317LysPhe: 1.317 ± 0.525
1.537LysGly: 1.537 ± 0.607
2.415LysHis: 2.415 ± 0.508
1.317LysIle: 1.317 ± 0.718
0.22LysLys: 0.22 ± 0.209
3.952LysLeu: 3.952 ± 0.844
0.659LysMet: 0.659 ± 0.39
1.317LysAsn: 1.317 ± 0.787
2.854LysPro: 2.854 ± 0.609
2.415LysGln: 2.415 ± 0.257
3.074LysArg: 3.074 ± 0.725
2.415LysSer: 2.415 ± 0.293
1.976LysThr: 1.976 ± 0.496
1.537LysVal: 1.537 ± 0.64
0.659LysTrp: 0.659 ± 0.41
0.878LysTyr: 0.878 ± 0.594
0.0LysXaa: 0.0 ± 0.0
Leu
9.66LeuAla: 9.66 ± 0.784
2.195LeuCys: 2.195 ± 0.516
4.83LeuAsp: 4.83 ± 1.172
5.269LeuGlu: 5.269 ± 1.23
1.976LeuPhe: 1.976 ± 0.903
5.488LeuGly: 5.488 ± 0.796
3.513LeuHis: 3.513 ± 0.715
3.513LeuIle: 3.513 ± 0.739
3.074LeuLys: 3.074 ± 1.106
5.488LeuLeu: 5.488 ± 0.695
1.537LeuMet: 1.537 ± 0.374
3.074LeuAsn: 3.074 ± 0.587
4.83LeuPro: 4.83 ± 0.718
3.952LeuGln: 3.952 ± 0.951
5.928LeuArg: 5.928 ± 0.784
6.367LeuSer: 6.367 ± 1.433
4.391LeuThr: 4.391 ± 0.911
4.391LeuVal: 4.391 ± 0.518
0.878LeuTrp: 0.878 ± 0.329
2.415LeuTyr: 2.415 ± 0.321
0.0LeuXaa: 0.0 ± 0.0
Met
2.634MetAla: 2.634 ± 0.764
0.22MetCys: 0.22 ± 0.174
1.317MetAsp: 1.317 ± 0.14
0.439MetGlu: 0.439 ± 0.253
0.439MetPhe: 0.439 ± 0.398
1.098MetGly: 1.098 ± 0.441
0.878MetHis: 0.878 ± 0.31
0.439MetIle: 0.439 ± 0.365
0.878MetLys: 0.878 ± 0.333
1.317MetLeu: 1.317 ± 0.581
0.878MetMet: 0.878 ± 0.594
0.878MetAsn: 0.878 ± 0.333
0.878MetPro: 0.878 ± 0.322
0.659MetGln: 0.659 ± 0.521
3.074MetArg: 3.074 ± 0.443
1.976MetSer: 1.976 ± 0.861
1.317MetThr: 1.317 ± 0.718
1.098MetVal: 1.098 ± 0.303
0.22MetTrp: 0.22 ± 0.174
1.317MetTyr: 1.317 ± 0.438
0.0MetXaa: 0.0 ± 0.0
Asn
4.61AsnAla: 4.61 ± 0.78
0.22AsnCys: 0.22 ± 0.209
2.195AsnAsp: 2.195 ± 0.726
1.537AsnGlu: 1.537 ± 0.49
1.976AsnPhe: 1.976 ± 0.574
3.293AsnGly: 3.293 ± 0.716
1.317AsnHis: 1.317 ± 0.596
1.756AsnIle: 1.756 ± 0.456
1.976AsnLys: 1.976 ± 1.311
3.513AsnLeu: 3.513 ± 0.617
1.976AsnMet: 1.976 ± 0.341
0.878AsnAsn: 0.878 ± 0.383
2.195AsnPro: 2.195 ± 0.691
1.098AsnGln: 1.098 ± 0.467
2.415AsnArg: 2.415 ± 0.865
3.513AsnSer: 3.513 ± 1.41
1.756AsnThr: 1.756 ± 0.812
2.195AsnVal: 2.195 ± 0.809
0.439AsnTrp: 0.439 ± 0.419
0.439AsnTyr: 0.439 ± 0.239
0.0AsnXaa: 0.0 ± 0.0
Pro
4.83ProAla: 4.83 ± 1.166
0.659ProCys: 0.659 ± 0.362
2.634ProAsp: 2.634 ± 0.849
1.317ProGlu: 1.317 ± 0.478
1.537ProPhe: 1.537 ± 0.793
3.513ProGly: 3.513 ± 0.899
1.976ProHis: 1.976 ± 0.528
2.195ProIle: 2.195 ± 0.494
2.634ProLys: 2.634 ± 0.725
3.074ProLeu: 3.074 ± 0.737
0.439ProMet: 0.439 ± 0.348
1.756ProAsn: 1.756 ± 0.419
1.756ProPro: 1.756 ± 0.779
1.537ProGln: 1.537 ± 0.478
2.195ProArg: 2.195 ± 0.78
4.83ProSer: 4.83 ± 1.076
3.074ProThr: 3.074 ± 0.955
3.732ProVal: 3.732 ± 0.546
0.878ProTrp: 0.878 ± 0.429
1.317ProTyr: 1.317 ± 0.507
0.0ProXaa: 0.0 ± 0.0
Gln
3.732GlnAla: 3.732 ± 0.675
0.878GlnCys: 0.878 ± 0.73
1.756GlnAsp: 1.756 ± 0.806
1.756GlnGlu: 1.756 ± 0.835
1.098GlnPhe: 1.098 ± 0.379
1.976GlnGly: 1.976 ± 0.586
1.317GlnHis: 1.317 ± 0.58
1.537GlnIle: 1.537 ± 0.338
0.659GlnLys: 0.659 ± 0.276
5.049GlnLeu: 5.049 ± 1.04
1.098GlnMet: 1.098 ± 0.566
0.878GlnAsn: 0.878 ± 0.37
1.537GlnPro: 1.537 ± 0.836
4.83GlnGln: 4.83 ± 0.677
4.391GlnArg: 4.391 ± 0.618
3.293GlnSer: 3.293 ± 0.553
1.317GlnThr: 1.317 ± 0.531
3.513GlnVal: 3.513 ± 1.017
1.098GlnTrp: 1.098 ± 0.256
1.976GlnTyr: 1.976 ± 0.432
0.0GlnXaa: 0.0 ± 0.0
Arg
6.367ArgAla: 6.367 ± 0.752
1.317ArgCys: 1.317 ± 0.588
5.269ArgAsp: 5.269 ± 1.207
3.952ArgGlu: 3.952 ± 0.689
1.756ArgPhe: 1.756 ± 0.833
2.854ArgGly: 2.854 ± 1.094
4.61ArgHis: 4.61 ± 2.112
2.854ArgIle: 2.854 ± 0.404
1.756ArgLys: 1.756 ± 0.19
5.269ArgLeu: 5.269 ± 0.91
1.537ArgMet: 1.537 ± 0.386
2.195ArgAsn: 2.195 ± 0.293
2.415ArgPro: 2.415 ± 0.382
2.415ArgGln: 2.415 ± 0.732
5.049ArgArg: 5.049 ± 0.681
6.806ArgSer: 6.806 ± 0.989
3.074ArgThr: 3.074 ± 1.1
4.391ArgVal: 4.391 ± 0.933
1.098ArgTrp: 1.098 ± 0.258
2.415ArgTyr: 2.415 ± 0.64
0.0ArgXaa: 0.0 ± 0.0
Ser
8.782SerAla: 8.782 ± 1.174
1.756SerCys: 1.756 ± 0.735
4.171SerAsp: 4.171 ± 0.625
3.952SerGlu: 3.952 ± 1.287
1.976SerPhe: 1.976 ± 0.644
7.025SerGly: 7.025 ± 0.982
1.976SerHis: 1.976 ± 0.709
2.854SerIle: 2.854 ± 0.924
2.634SerLys: 2.634 ± 1.061
6.147SerLeu: 6.147 ± 0.614
0.439SerMet: 0.439 ± 0.398
4.391SerAsn: 4.391 ± 1.669
3.952SerPro: 3.952 ± 0.766
2.195SerGln: 2.195 ± 0.351
4.171SerArg: 4.171 ± 1.171
7.464SerSer: 7.464 ± 2.038
7.025SerThr: 7.025 ± 1.141
6.367SerVal: 6.367 ± 1.614
0.439SerTrp: 0.439 ± 0.221
2.634SerTyr: 2.634 ± 0.402
0.0SerXaa: 0.0 ± 0.0
Thr
6.367ThrAla: 6.367 ± 1.069
0.878ThrCys: 0.878 ± 0.415
4.61ThrAsp: 4.61 ± 0.94
2.634ThrGlu: 2.634 ± 0.504
2.854ThrPhe: 2.854 ± 0.448
3.293ThrGly: 3.293 ± 0.766
2.195ThrHis: 2.195 ± 1.031
1.098ThrIle: 1.098 ± 0.336
2.195ThrLys: 2.195 ± 0.781
6.586ThrLeu: 6.586 ± 1.726
1.976ThrMet: 1.976 ± 0.238
1.756ThrAsn: 1.756 ± 0.49
4.61ThrPro: 4.61 ± 1.173
2.415ThrGln: 2.415 ± 0.613
2.415ThrArg: 2.415 ± 0.713
4.391ThrSer: 4.391 ± 0.883
6.147ThrThr: 6.147 ± 0.99
6.147ThrVal: 6.147 ± 1.465
0.439ThrTrp: 0.439 ± 0.253
1.756ThrTyr: 1.756 ± 0.431
0.0ThrXaa: 0.0 ± 0.0
Val
7.464ValAla: 7.464 ± 1.726
2.415ValCys: 2.415 ± 0.948
3.074ValAsp: 3.074 ± 0.987
4.83ValGlu: 4.83 ± 0.907
1.756ValPhe: 1.756 ± 0.496
4.171ValGly: 4.171 ± 0.549
2.634ValHis: 2.634 ± 0.386
1.756ValIle: 1.756 ± 0.677
3.513ValLys: 3.513 ± 0.501
6.586ValLeu: 6.586 ± 1.343
1.756ValMet: 1.756 ± 0.667
3.952ValAsn: 3.952 ± 1.179
3.293ValPro: 3.293 ± 0.406
2.415ValGln: 2.415 ± 0.415
5.269ValArg: 5.269 ± 1.123
4.391ValSer: 4.391 ± 1.612
3.952ValThr: 3.952 ± 1.062
6.586ValVal: 6.586 ± 0.858
0.439ValTrp: 0.439 ± 0.239
2.854ValTyr: 2.854 ± 0.536
0.0ValXaa: 0.0 ± 0.0
Trp
1.976TrpAla: 1.976 ± 0.504
0.22TrpCys: 0.22 ± 0.183
0.878TrpAsp: 0.878 ± 0.335
1.098TrpGlu: 1.098 ± 0.336
0.22TrpPhe: 0.22 ± 0.174
0.439TrpGly: 0.439 ± 0.419
0.659TrpHis: 0.659 ± 0.548
0.0TrpIle: 0.0 ± 0.0
0.439TrpLys: 0.439 ± 0.419
1.976TrpLeu: 1.976 ± 0.603
0.0TrpMet: 0.0 ± 0.0
0.22TrpAsn: 0.22 ± 0.209
0.439TrpPro: 0.439 ± 0.227
1.098TrpGln: 1.098 ± 0.371
0.439TrpArg: 0.439 ± 0.221
1.317TrpSer: 1.317 ± 0.821
0.878TrpThr: 0.878 ± 0.338
1.756TrpVal: 1.756 ± 0.579
0.0TrpTrp: 0.0 ± 0.0
0.439TrpTyr: 0.439 ± 0.221
0.0TrpXaa: 0.0 ± 0.0
Tyr
2.634TyrAla: 2.634 ± 0.371
0.659TyrCys: 0.659 ± 0.376
3.293TyrAsp: 3.293 ± 0.941
1.098TyrGlu: 1.098 ± 0.521
0.22TyrPhe: 0.22 ± 0.209
1.976TyrGly: 1.976 ± 0.199
0.659TyrHis: 0.659 ± 0.261
0.659TyrIle: 0.659 ± 0.41
1.537TyrLys: 1.537 ± 0.451
2.195TyrLeu: 2.195 ± 0.86
1.098TyrMet: 1.098 ± 0.543
2.415TyrAsn: 2.415 ± 0.744
1.098TyrPro: 1.098 ± 0.58
2.195TyrGln: 2.195 ± 0.241
1.976TyrArg: 1.976 ± 0.581
3.732TyrSer: 3.732 ± 0.584
1.976TyrThr: 1.976 ± 0.492
1.976TyrVal: 1.976 ± 0.515
0.659TyrTrp: 0.659 ± 0.231
1.756TyrTyr: 1.756 ± 0.88
0.0TyrXaa: 0.0 ± 0.0
Xaa
0.0XaaAla: 0.0 ± 0.0
0.0XaaCys: 0.0 ± 0.0
0.0XaaAsp: 0.0 ± 0.0
0.0XaaGlu: 0.0 ± 0.0
0.0XaaPhe: 0.0 ± 0.0
0.0XaaGly: 0.0 ± 0.0
0.0XaaHis: 0.0 ± 0.0
0.0XaaIle: 0.0 ± 0.0
0.0XaaLys: 0.0 ± 0.0
0.0XaaLeu: 0.0 ± 0.0
0.0XaaMet: 0.0 ± 0.0
0.0XaaAsn: 0.0 ± 0.0
0.0XaaPro: 0.0 ± 0.0
0.0XaaGln: 0.0 ± 0.0
0.0XaaArg: 0.0 ± 0.0
0.0XaaSer: 0.0 ± 0.0
0.0XaaThr: 0.0 ± 0.0
0.0XaaVal: 0.0 ± 0.0
0.0XaaTrp: 0.0 ± 0.0
0.0XaaTyr: 0.0 ± 0.0
0.0XaaXaa: 0.0 ± 0.0
Statistics based on 5 proteins (4556 amino acids)

Note: The error has been estimated with the bootstraping (x100) at the protein level

Above dipeptide statistics (among other stats for this proteome) you can download from this CSV file
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski