Capybara microvirus Cap3_SP_320

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 6.51

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 9 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4P8W5M5|A0A4P8W5M5_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_320 OX=2585428 PE=4 SV=1
MM1 pKa = 7.63PSSSRR6 pKa = 11.84SPSVEE11 pKa = 3.53LVRR14 pKa = 11.84PFVFSSRR21 pKa = 11.84PLDD24 pKa = 4.21DD25 pKa = 5.16SDD27 pKa = 4.57FFCSSVYY34 pKa = 10.77DD35 pKa = 4.36RR36 pKa = 11.84IVDD39 pKa = 3.61DD40 pKa = 3.91TDD42 pKa = 4.11FVSSSSEE49 pKa = 3.47NRR51 pKa = 11.84VQFLSQSLGAGSGPGLYY68 pKa = 10.4DD69 pKa = 3.69FSKK72 pKa = 10.89PSDD75 pKa = 3.5FDD77 pKa = 3.87LEE79 pKa = 4.16NFEE82 pKa = 5.84RR83 pKa = 11.84IDD85 pKa = 3.55KK86 pKa = 10.4GLSSMVLALRR96 pKa = 11.84DD97 pKa = 3.84GKK99 pKa = 9.25LTPDD103 pKa = 5.06DD104 pKa = 3.87ISTLRR109 pKa = 11.84TKK111 pKa = 11.14LMDD114 pKa = 3.68AVEE117 pKa = 4.31HH118 pKa = 6.36SKK120 pKa = 10.9SEE122 pKa = 4.09HH123 pKa = 5.07EE124 pKa = 4.17RR125 pKa = 11.84ALAEE129 pKa = 3.91QALEE133 pKa = 4.07EE134 pKa = 4.34VVAARR139 pKa = 11.84QSHH142 pKa = 6.39LDD144 pKa = 3.17KK145 pKa = 10.9STGFEE150 pKa = 4.07PPDD153 pKa = 3.41VSKK156 pKa = 11.34SS157 pKa = 3.37

Molecular weight: 17.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W548|A0A4P8W548_9VIRU Uncharacterized protein OS=Capybara microvirus Cap3_SP_320 OX=2585428 PE=4 SV=1
MM1 pKa = 7.27FLILFHH7 pKa = 6.56FEE9 pKa = 4.52KK10 pKa = 10.79KK11 pKa = 10.69LLDD14 pKa = 3.22IFLFLLYY21 pKa = 10.51YY22 pKa = 11.01LFMPLIFGIISSLIQTRR39 pKa = 11.84EE40 pKa = 3.65SNMRR44 pKa = 11.84GGSTAPVLASGVSDD58 pKa = 3.19ILKK61 pKa = 10.66SLGGTKK67 pKa = 10.12

Molecular weight: 7.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

9

0

9

1833

67

668

203.7

23.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.183 ± 0.863

1.964 ± 0.51

7.583 ± 0.729

4.364 ± 0.408

7.038 ± 1.049

5.401 ± 0.774

2.073 ± 0.428

5.074 ± 0.729

4.364 ± 0.345

9.22 ± 0.686

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.8 ± 0.366

4.201 ± 0.729

4.474 ± 0.583

2.837 ± 0.693

6.438 ± 0.722

11.511 ± 0.725

3.873 ± 0.54

6.383 ± 0.95

0.818 ± 0.338

5.401 ± 0.683
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski