Capybara microvirus Cap1_SP_143

Taxonomy: Viruses; Monodnaviria; Sangervirae; Phixviricota; Malgrandaviricetes; Petitvirales; Microviridae; unclassified Microviridae

Average proteome isoelectric point is 5.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4V1FVP9|A0A4V1FVP9_9VIRU Minor capsid protein OS=Capybara microvirus Cap1_SP_143 OX=2585389 PE=4 SV=1
MM1 pKa = 7.48LRR3 pKa = 11.84TNLTLSKK10 pKa = 10.45RR11 pKa = 11.84IFSDD15 pKa = 3.05SGSRR19 pKa = 11.84FVDD22 pKa = 4.01TYY24 pKa = 11.26RR25 pKa = 11.84PVINADD31 pKa = 2.61GHH33 pKa = 5.97MDD35 pKa = 5.32LIQSGKK41 pKa = 9.73KK42 pKa = 9.79DD43 pKa = 3.58VYY45 pKa = 11.61ADD47 pKa = 3.5IQSHH51 pKa = 6.66AEE53 pKa = 3.8EE54 pKa = 5.12CDD56 pKa = 3.18INLLIEE62 pKa = 4.86KK63 pKa = 9.85YY64 pKa = 10.94QMTGDD69 pKa = 3.49PAVINKK75 pKa = 9.78RR76 pKa = 11.84EE77 pKa = 3.97GLYY80 pKa = 10.69LDD82 pKa = 3.73VTDD85 pKa = 4.15MPKK88 pKa = 9.82TYY90 pKa = 10.94AEE92 pKa = 3.8IYY94 pKa = 10.02EE95 pKa = 4.37RR96 pKa = 11.84VAQAQDD102 pKa = 3.5VFSKK106 pKa = 11.01LPLSVKK112 pKa = 10.14EE113 pKa = 4.86KK114 pKa = 10.88FDD116 pKa = 4.02FDD118 pKa = 3.91PAKK121 pKa = 10.52FFASLGSKK129 pKa = 7.46EE130 pKa = 4.22TSALLAEE137 pKa = 4.76TFNASPASDD146 pKa = 4.08AGDD149 pKa = 3.67ASSSLSSNEE158 pKa = 3.51AATPTLSVEE167 pKa = 4.22GDD169 pKa = 3.15

Molecular weight: 18.52 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4P8W7Z4|A0A4P8W7Z4_9VIRU Major capsid protein OS=Capybara microvirus Cap1_SP_143 OX=2585389 PE=3 SV=1
MM1 pKa = 7.52ACSNPNRR8 pKa = 11.84IFVIGKK14 pKa = 8.72NPKK17 pKa = 8.28TGKK20 pKa = 10.14KK21 pKa = 10.11KK22 pKa = 10.3IVFCSRR28 pKa = 11.84FVRR31 pKa = 11.84AVGVKK36 pKa = 10.36DD37 pKa = 3.94DD38 pKa = 4.04GSVDD42 pKa = 3.26RR43 pKa = 11.84FYY45 pKa = 11.46EE46 pKa = 4.34DD47 pKa = 3.56PEE49 pKa = 4.17KK50 pKa = 11.34DD51 pKa = 3.37KK52 pKa = 11.76VPFTYY57 pKa = 10.09RR58 pKa = 11.84SRR60 pKa = 11.84LYY62 pKa = 10.56KK63 pKa = 10.35FVVSDD68 pKa = 4.62YY69 pKa = 11.25IDD71 pKa = 3.87VPCGKK76 pKa = 10.27CLGCRR81 pKa = 11.84LAYY84 pKa = 10.14SKK86 pKa = 10.63QWTSRR91 pKa = 11.84IMLEE95 pKa = 4.74LPYY98 pKa = 9.92HH99 pKa = 5.37DD100 pKa = 5.01HH101 pKa = 6.18SWFVTLTYY109 pKa = 10.78DD110 pKa = 5.53DD111 pKa = 3.66EE112 pKa = 4.6HH113 pKa = 8.71LPINEE118 pKa = 3.95FTDD121 pKa = 3.93PVTSEE126 pKa = 4.12VGEE129 pKa = 4.24STTLVKK135 pKa = 10.52RR136 pKa = 11.84HH137 pKa = 5.37VQLFMKK143 pKa = 10.1KK144 pKa = 9.78LRR146 pKa = 11.84NAYY149 pKa = 8.88PDD151 pKa = 3.15NHH153 pKa = 7.27LMYY156 pKa = 10.2FFAGEE161 pKa = 3.89YY162 pKa = 9.88GDD164 pKa = 3.57RR165 pKa = 11.84SRR167 pKa = 11.84RR168 pKa = 11.84PHH170 pKa = 4.59YY171 pKa = 10.08HH172 pKa = 7.17AIIFDD177 pKa = 4.31LPLDD181 pKa = 4.04DD182 pKa = 4.97LVFYY186 pKa = 8.76KK187 pKa = 10.47TSPNGDD193 pKa = 2.98IYY195 pKa = 11.22FNSPKK200 pKa = 10.35LEE202 pKa = 4.65KK203 pKa = 9.62IWSHH207 pKa = 5.58GFVVVANVTYY217 pKa = 10.99ASAAYY222 pKa = 5.99TARR225 pKa = 11.84YY226 pKa = 8.85IMKK229 pKa = 9.18KK230 pKa = 10.34QNVSDD235 pKa = 3.96EE236 pKa = 3.91NSIYY240 pKa = 10.52ARR242 pKa = 11.84KK243 pKa = 10.05NIEE246 pKa = 3.92PEE248 pKa = 3.99FCLMSQKK255 pKa = 10.41PSIGRR260 pKa = 11.84RR261 pKa = 11.84YY262 pKa = 10.21FEE264 pKa = 4.82DD265 pKa = 3.92HH266 pKa = 7.27PDD268 pKa = 3.77VYY270 pKa = 11.44DD271 pKa = 4.65LDD273 pKa = 4.24YY274 pKa = 11.5LSLAGGYY281 pKa = 8.48RR282 pKa = 11.84ASIPKK287 pKa = 10.04YY288 pKa = 10.14FDD290 pKa = 3.42YY291 pKa = 11.28LLEE294 pKa = 4.44KK295 pKa = 10.55VDD297 pKa = 4.35AEE299 pKa = 3.82RR300 pKa = 11.84LQAIKK305 pKa = 10.36EE306 pKa = 4.01EE307 pKa = 4.24RR308 pKa = 11.84KK309 pKa = 9.94FFAQHH314 pKa = 6.4LANIKK319 pKa = 10.36EE320 pKa = 4.3SMHH323 pKa = 5.7TYY325 pKa = 10.4DD326 pKa = 4.71RR327 pKa = 11.84EE328 pKa = 4.23SHH330 pKa = 6.52FDD332 pKa = 3.69VIHH335 pKa = 6.61EE336 pKa = 4.21NLVSRR341 pKa = 11.84SKK343 pKa = 10.94HH344 pKa = 4.79LAKK347 pKa = 10.69DD348 pKa = 3.56LL349 pKa = 4.02

Molecular weight: 40.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1478

87

551

295.6

33.01

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.593 ± 2.225

0.609 ± 0.338

6.428 ± 0.975

4.736 ± 0.578

4.736 ± 0.98

5.683 ± 0.776

2.165 ± 0.67

5.074 ± 0.704

4.804 ± 1.016

7.172 ± 0.617

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.639 ± 0.724

6.157 ± 1.564

4.668 ± 0.612

3.518 ± 0.552

4.398 ± 0.696

10.352 ± 1.6

5.548 ± 0.594

6.089 ± 0.579

1.218 ± 0.397

5.413 ± 0.582
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski