Frateuria terrea

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Rhodanobacteraceae; Frateuria

Average proteome isoelectric point is 6.85

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3427 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H6UG85|A0A1H6UG85_9GAMM Heme exporter protein B OS=Frateuria terrea OX=529704 GN=SAMN04487997_1880 PE=3 SV=1
MM1 pKa = 7.32NKK3 pKa = 9.32IFKK6 pKa = 9.98SALAAAVLIALSSLGGTAYY25 pKa = 10.52AATATSDD32 pKa = 3.85LPVSASVTATCTIDD46 pKa = 3.51ASGGLAFGAYY56 pKa = 10.25DD57 pKa = 3.42PVVTNASTDD66 pKa = 3.46LTGQGTIDD74 pKa = 3.51TTCTNGASVTVTLGQGANADD94 pKa = 4.06TGSSDD99 pKa = 3.26AAPVRR104 pKa = 11.84RR105 pKa = 11.84MLSGASDD112 pKa = 3.61YY113 pKa = 11.36LSYY116 pKa = 11.04QLYY119 pKa = 9.93SDD121 pKa = 4.44SGRR124 pKa = 11.84STVWGNTAGTGAPVTGTGTVVSTTVYY150 pKa = 11.12GLITAGQNVPSGSYY164 pKa = 10.5SDD166 pKa = 3.8TVVATVTFF174 pKa = 4.26

Molecular weight: 17.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H6SU39|A0A1H6SU39_9GAMM Glucose-6-phosphate 1-dehydrogenase OS=Frateuria terrea OX=529704 GN=zwf PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 10.06LKK11 pKa = 10.38RR12 pKa = 11.84ARR14 pKa = 11.84THH16 pKa = 5.89GFRR19 pKa = 11.84ARR21 pKa = 11.84MATADD26 pKa = 3.35GRR28 pKa = 11.84KK29 pKa = 9.36VLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.75GRR39 pKa = 11.84KK40 pKa = 8.92RR41 pKa = 11.84LIPP44 pKa = 4.02

Molecular weight: 5.13 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3427

0

3427

1139055

31

3079

332.4

36.13

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.114 ± 0.065

0.868 ± 0.015

5.694 ± 0.036

5.177 ± 0.048

3.323 ± 0.022

8.639 ± 0.051

2.543 ± 0.023

3.892 ± 0.03

2.696 ± 0.043

11.098 ± 0.062

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.197 ± 0.019

2.39 ± 0.033

5.531 ± 0.035

3.792 ± 0.028

7.74 ± 0.052

5.023 ± 0.037

4.865 ± 0.044

7.424 ± 0.035

1.576 ± 0.021

2.417 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski